Daucus carota (carrot): 108220771
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Entry
108220771 CDS
T05350
Name
(RefSeq) probable small nuclear ribonucleoprotein F
KO
K11098
small nuclear ribonucleoprotein F
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108220771
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108220771
03041 Spliceosome [BR:
dcr03041
]
108220771
03032 DNA replication proteins [BR:
dcr03032
]
108220771
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
108220771
Spliceosome [BR:
dcr03041
]
Complex A
U1 snRNP components
Sm proteins
108220771
U2 snRNP components
108220771
Complex B
U1 snRNP components
108220771
U4/U6.U5 tri-snRNP components
108220771
Complex C
U2 snRNP components
108220771
DNA replication proteins [BR:
dcr03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
108220771
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
108220771
NCBI-ProteinID:
XP_017250117
UniProt:
A0AAF1B3G3
LinkDB
All DBs
Position
5:complement(42487275..42489635)
Genome browser
AA seq
88 aa
AA seq
DB search
MATVPVNPKPFLNNLTGKHVIVKLKWGMEYKGFLVSVDSYMNLQLANSEEYIDGQFTGNL
GEILIRCNNVLYMRGVPEDEDLEDADRD
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atggccactgtaccggttaatcccaaaccattcttgaacaatttaactggaaagcatgtc
attgtcaaactgaagtggggaatggaatacaaagggtttctcgtctctgtggattcatac
atgaacttgcagcttgcaaactctgaagagtacattgatgggcagttcacaggaaacctc
ggagagatactgatcaggtgcaataatgttctatatatgcgaggggtgccagaggatgag
gacctagaggatgcagaccgcgactaa
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