Daucus carota (carrot): 108220926
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Entry
108220926 CDS
T05350
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108220926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108220926
04121 Ubiquitin system [BR:
dcr04121
]
108220926
03036 Chromosome and associated proteins [BR:
dcr03036
]
108220926
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108220926
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
108220926
Ubiquitin system [BR:
dcr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
108220926
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
108220926
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
108220926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-RING_UBOX
zf-C3HC4_3
zf-HC5HC2H_2
zf-C3HC4
zf-C3HC4_4
zf-RING_5
zf-C3HC4_2
PHD_NSD
zf-RING_10
zf-RING_2
Prok-RING_4
zf-RING_6
RTT107_BRCT_5
U-box
Sina_RING
Motif
Other DBs
NCBI-GeneID:
108220926
NCBI-ProteinID:
XP_017250311
LinkDB
All DBs
Position
5:36013292..36018333
Genome browser
AA seq
564 aa
AA seq
DB search
MEDSWSNQQTMHSTPWFNHLRKLGSLIKCPICLELLKGPVLLPCDHFICNSCIQNQAKNG
SKCHVCNEQYADREIRSAPYMENVIAVYKSLCSVPLAELFHPPASGDNSISGRPLCFPNG
CQTKTSIGQKGYPCIEEEIALESINMTKLKSDLSPRTCSFSEINKDSKKRKKSNLSEPDE
CGFCHSSKVTDETGPILHIANQELLHGDLASFSKVISIHKVCIDWTPMVYFEGEKIKNLD
IELARAAKLKCSGCGEKGAALGCYVKSCRKTYHVPCALKIPNCKWDSDNFLMLCPSHKSN
KFPRKILQREKYDRVEAGPLASRLSSGESNFWSASPHGAKTWVFCGSALSSMDLCYLVKF
ARRCDATVARSWRPDITHVITATDANGACTRTMKVLMAILHGRWIISMDWIKSCSEANRP
VDEKHYEVTLDNHGSRNGPRTGRQLALDNGPKLFGSHIFYFSGNFDSALMDNLKTLVHSA
GGFVIENKEHLVSQSCVAKGTSRTLIVYNADDFNQWASGDKESHMLEIPEAAEDLALRIG
SRVVQHTWILESIAACKLQPLSCY
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atggaagattcttggtctaatcaacaaactatgcactctactccatggttcaatcaccta
cgcaaactcggctcacttatcaaatgccccatctgtttggagttgcttaaagggcctgtt
ttgctcccctgtgatcatttcatctgcaattcatgcattcaaaatcaggccaagaatggt
tccaagtgccatgtttgcaatgaacaatatgctgatcgagagatacgatctgcaccttat
atggaaaatgtgatagcagtttataaaagcttgtgttcggttcccctagctgagttattt
cacccccctgcttctggggataattcaatcagtggacgacctctttgtttcccaaatggt
tgtcaaacaaaaacaagtattggccaaaaaggatatccgtgtatagaagaggagattgca
cttgaatcaataaacatgaccaaattgaaatcagatttgtcaccgaggacttgttcattt
agcgagatcaataaggactccaagaaacgaaagaaatcgaatttgtcagaaccagatgag
tgtggcttttgtcattcttctaaagttactgatgaaactgggccaattctacatattgcc
aatcaggagttattacatggagatttggcgtctttctccaaggttattagcattcacaag
gtttgcattgattggacaccgatggtgtatttcgagggtgaaaagataaagaatttagat
atagaactggctagggcagctaagctaaaatgtagtggatgtggggaaaagggggctgca
cttggctgctatgtgaagtcttgtcggaagacgtatcacgtaccttgtgcattaaagata
ccaaattgcaaatgggattctgacaactttttaatgctgtgcccatctcacaagtccaac
aaatttccaaggaaaattttacagcgtgaaaagtatgacagagtagaagctggtcctctg
gcatcccgactgagttccggggagtcaaatttctggtcggcatcacctcatggagcaaaa
acttgggtattctgtggatctgctttgtcttccatggatctgtgctatctggtgaagttc
gctagacgttgtgatgcaactgtggcaaggtcttggagaccagatataacccatgtaatt
actgcgacagatgcaaacggtgcctgtacgaggacaatgaaagtcctcatggcaattttg
cacggacgatggattatctcaatggactggataaaatcttgctcagaagcaaacaggcct
gtggatgaaaagcattacgaagttaccctagataatcatggctctcgcaacggccccagg
accggaagacagctagctttagataatgggccaaagctatttggtagccacatattctac
ttcagtggaaattttgactcggctctcatggataatctcaaaactttggttcactctgct
ggtggtttcgttattgagaacaaggagcaccttgtctcacaaagttgtgttgccaaggga
acttcaagaactttaattgtttataatgccgatgactttaatcaatgggcttcaggagat
aaagaatcccatatgttggaaataccagaggcagcagaagatttggctctaaggattggt
tctagggttgttcagcacacatggattttggagtcaattgcagcatgtaagttgcagcct
ttgtcctgctattga
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integrated database retrieval system
