Daucus carota (carrot): 108221002
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Entry
108221002 CDS
T05350
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108221002
09123 Folding, sorting and degradation
03018 RNA degradation
108221002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108221002
03041 Spliceosome [BR:
dcr03041
]
108221002
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108221002
mRNA degradation factors
5'-3' decay
Lsm complex
108221002
Spliceosome [BR:
dcr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
108221002
Complex C
U2 snRNP components
108221002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF150_C
Motif
Other DBs
NCBI-GeneID:
108221002
NCBI-ProteinID:
XP_017250393
UniProt:
A0AAF0X4K3
LinkDB
All DBs
Position
5:34621945..34625278
Genome browser
AA seq
93 aa
AA seq
DB search
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgttgttcttttcgtattttaaggatttggtaggaagagaagtgaccgttgagttgaag
aacgatctggcaatacgaggaacattgcattcagtggaccagtatttgaacatcaagctt
gagaatactagggttgttgatcaggacaagtacccccacatgctttcagtccgaaactgt
tttattcgaggatctgttgtaaggtatgtccagctaccacctgacggagtggacgttgac
ctgctacatgatgccacgagaagagaagcacgtggcggctag
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