Daucus carota (carrot): 108221030
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Entry
108221030 CDS
T05350
Name
(RefSeq) cell division control protein 48 homolog E
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
dcr
Daucus carota (carrot)
Pathway
dcr04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108221030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108221030
03009 Ribosome biogenesis [BR:
dcr03009
]
108221030
04131 Membrane trafficking [BR:
dcr04131
]
108221030
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dcr04147
]
108221030
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
108221030
Ribosome biogenesis [BR:
dcr03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
108221030
Membrane trafficking [BR:
dcr04131
]
SNARE
SNARE associated proteins
Others
108221030
Autophagy
Aggrephagy
Other aggrephagy associated proteins
108221030
Exosome [BR:
dcr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108221030
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_2
CDC48_2
AAA_5
AAA_33
AAA_14
AAA_22
TIP49
NPHP3_N
RNA_helicase
nSTAND3
AAA_17
AAA_28
Mg_chelatase
ATPase_2
nSTAND_NTPase5
Parvo_NS1
NACHT
AAA_18
ABC_tran
NB-ARC
AAA_7
Viral_helicase1
Vps4_C
IstB_IS21
TsaE
DUF815
ResIII
Zeta_toxin
AAA_24
Rad17
Zot
Motif
Other DBs
NCBI-GeneID:
108221030
NCBI-ProteinID:
XP_017250418
LinkDB
All DBs
Position
5
Genome browser
AA seq
764 aa
AA seq
DB search
MHPSKMEELQLFRGDTVLVKGKKRRDTICIVLADEQCEVPKVRLNKVVRANLRVRLGDVV
SVHQCPDVKYGKRVYILPLDDTIEGLTGNLFDAYLKPYFLDSYRPVRKGDFFLVRGGMRS
VEFKVVETDPGEYCVVAPDTEIFCEGDPIKREDEERLNEVGYDDVGGVRKQMSQIRELVE
LPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGE
SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGLKSRAHV
IVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLEKVSK
NTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQAALGTSNP
SALRETVVEVPDVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSRGVLFYGPPG
CGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDS
IATQRGSSQGDAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIY
IPLPDDASRLQIFKACLRKSPVSRDVDLLALARYTVGFSGADITEICQRSCKYAIRENIE
KDMEKERRKAENPEAMEEDEVDEVPEIKPAHFEESMKYARRSVSDADIRKYQMFAQTLQQ
SRGFGSEFRFTDRPSSSTAARAADPLASTTAGRYNDDDDDDLYG
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgcacccctctaaaatggaagagcttcagctattccgaggagacacagttttagtgaag
gggaaaaagcgaagggatactatatgcattgttcttgcagatgaacaatgtgaagtgcct
aaagtcagattgaacaaagttgttcgagccaatcttagggtacggctgggggatgttgtg
tcagtgcaccagtgtcctgatgtgaaatatggaaagcgggtttacatccttcctctggat
gacacaattgaaggtcttacgggaaacctttttgatgcatacttaaagccatactttctt
gactcttaccgacctgttaggaagggtgatttcttcctagttagaggggggatgcggagt
gttgaattcaaagtagttgagacagatcctggtgagtattgtgtggttgcacctgatact
gagatcttctgtgagggagatccaatcaagcgcgaggatgaggagagattaaatgaagtt
ggatacgatgatgttggtggtgtgaggaagcagatgtctcagattcgtgagctagttgag
cttcctctgagacatccacaacttttcaagtctattggtgtaaagcctccaaaaggtata
ttgttgtacgggcctccaggatccgggaaaactttgattgccagagctgtagctaatgag
acaggtgcttttttcttcttaataaatgggcctgaaattatgtccaagttggctggtgag
agcgagagcaacttaagaaaggcatttgaggaggctgaaaagaatgcgccatctattatc
tttattgatgagatagattccattgctccaaagcgagaaaagactcagggagaagttgag
aggcgcatagtgtctcaacttttgacattgatggatggcctcaagtcccgagctcatgtg
atagttatgggggctacgaataggccaaacagcattgaccctgctctcagaagatttggc
agatttgatcgggagattgatatcggtgtaccagatgaggtggggagacttgaagtcctt
agaattcatacaaaaaatatgaagcttgccgaagatgttgatctggaaaaagtttcgaaa
aatacccatgggtatgttggtgctgatcttgctgctctgtgcactgaggccgcccttcag
tgcatcagggagaaaatggatgtcatagacttggaggatgagacaattgatgcagaaata
ttgaattcaatggctgtttccaatgagcatttccaggccgcattgggaacttctaatcct
tcagctttgcgtgaaactgttgtggaagttccagatgtctcttgggatgatattggtgga
ttggaaaatgttaaaagggagcttcaagagactgttcaatacccagtggagcatccggag
aagtttgaaaaatttggcatgtcaccttccagaggagttcttttttatgggcctcctggc
tgtggtaaaacattacttgccaaggctattgctaatgaatgtcaggccaacttcataagt
gtcaaaggtcctgagttgctaacaatgtggtttggagaaagtgaggctaatgtacgagaa
atatttgacaaggctcgacagtcagctccatgtgtacttttctttgatgaattagattcc
attgctactcagcgtggcagttcacagggagatgctgcggatagagttttgaaccagctt
ctgactgagatggatggaatgacagcaaagaaaactgttttcataataggtgcaacaaac
agaccagacattattgatccagcactactcagaccaggacgactggaccagttaatatac
atccctcttccagatgatgcttctcgtcttcagatttttaaggcatgcctgcggaaatct
cctgtctcccgagatgttgaccttctagcacttgcacgctacacagttggcttcagtggc
gcagatataactgaaatttgccaacgttcctgcaagtatgccatcagagaaaatattgag
aaggatatggagaaagagagaagaaaggctgagaatcctgaagcaatggaagaagatgaa
gtggatgaggtcccagaaattaagccagcacactttgaggagtccatgaaatatgcacga
aggagtgtaagtgatgcagacataaggaaataccaaatgtttgcacagacattacagcaa
tctcgtggatttggatctgagtttaggtttactgatcgtcctagtagttcaacagctgcc
agagctgcagatccattggcatccacaactgctggcagatacaatgatgacgacgatgat
gatctttacggttga
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