Daucus carota (carrot): 108221856
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Entry
108221856 CDS
T05350
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
KO
K14829
pre-rRNA-processing protein IPI3
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dcr03009
]
108221856
Ribosome biogenesis [BR:
dcr03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
108221856
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_Prp19
NBCH_WD40
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_Vps41
Beta-prop_TEP1_2nd
EIF3I
WDR55
Beta-prop_EML
Beta-prop_DCAF4
Beta-prop_WDR90_POC16_2nd
Beta-prop_SPT8
Beta-prop_IP5PC_F
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_HPS5
WD40_RFWD3
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
WD40_like
Beta-prop_CAF1B_HIR1
Beta-prop_VPS8
PEP5_VPS11_N
Utp8_b_propeller
Nucleoporin_N
Beta-prop_NWD2_C
Motif
Other DBs
NCBI-GeneID:
108221856
NCBI-ProteinID:
XP_017251199
UniProt:
A0A162A575
LinkDB
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Position
5:45889430..45890998
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AA seq
419 aa
AA seq
DB search
MASSFQEIVVTSSPEGPLNGYNSMSGAISLKFVGSRSPRNGLCLVGKKLMAVSHVSAETG
LGSIHLYNWYCQTPFNTLAVPEPVAPLAATEDGSYLFAGGLSGRIHTLSLPSGDLIQSFP
AHRRVVSCLKINDDESLMLSGSDDGTIAVIPLYNLVSSSKVRKREMFLCRFVGHQGSITS
ITCGFGGGNYCTIMSTALDCTCKIWSLMHKTPIRSIKYPCPMLTVVMDSNESEFYAAGLD
GVIYKGALKASSRQAAQEARKIMPLKQKHYGPIVSIRILSNGQNLVTASEDGNVWVWDIQ
SEQVVRILGHEMKDISSMVVAKLFNDAESRVRAPKFTGGGGGFSTKELQRPVEVLELKER
VNVVVNDRRRAVRNLESALGIYETLLKEIVKQARGDKRSDSSSDETEDEDEDEDGTEDV
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaagttttcaagaaattgttgtcacaagctctcctgagggtcccctcaatggc
tataattccatgtctggtgctatttcattgaagtttgtcggaagccgatcaccccgtaac
ggtctttgccttgttgggaaaaaactgatggctgtgtcccatgtttctgcagagactgga
ttaggctcaattcatctctataactggtattgtcagaccccctttaatactcttgctgtc
cctgaacctgtggcgcccctagcggcaacagaagatggctcgtatctttttgctggtggc
ctttctggtcggatccacactctctcactcccttcaggagatctgattcaatcatttccc
gcgcacaggagagtcgtgtcttgtttgaaaattaatgacgacgaatctcttatgttgtcg
ggtagcgatgatggaacaattgctgttatccccctttacaacctcgtatcatcctccaag
gtgagaaaaagggaaatgtttttatgtcgatttgtgggccatcaagggtctataacttcc
atcacttgcggctttggagggggcaattactgcactataatgtctaccgctttggactgc
acttgcaaaatctggagcctgatgcacaagacacccatccgttccattaaatatccttgc
ccgatgttgactgtggtgatggactccaatgagtcagaattctatgctgcaggtttagat
ggagtgatttacaaaggagcactgaaggcctcatctcgacaggctgctcaagaagcacgt
aaaatcatgcctctgaagcaaaagcattatggtcccattgtatccatccgaatactaagc
aatggacagaacctggtaactgcctcagaagatggtaatgtctgggtctgggacatccaa
agtgaacaagttgtcagaatcctcgggcacgaaatgaaagacatcagttccatggtggtg
gccaaactgtttaatgatgctgagagccgtgtcagggccccgaaattcaccggaggagga
ggtggtttctctactaaagagctgcaaaggcctgtagaagtcttggaattaaaggaaagg
gtaaatgttgttgtgaatgacagacgcagagctgttcgtaacctggaatctgcattgggg
atttacgaaactctgttgaaggagattgtaaagcaagctaggggcgataaaaggagtgat
agttcaagtgatgaaactgaagatgaagatgaagatgaagatggaactgaagatgtttga
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