Daucus carota (carrot): 108221903
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Entry
108221903 CDS
T05350
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03022
Basal transcription factors
dcr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108221903
09124 Replication and repair
03420 Nucleotide excision repair
108221903
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcr03021
]
108221903
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108221903
Transcription machinery [BR:
dcr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
108221903
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
108221903
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
108221903
NCBI-ProteinID:
XP_017251249
UniProt:
A0A162A2I5
LinkDB
All DBs
Position
5:18227988..18234798
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AA seq
289 aa
AA seq
DB search
MTPVSRKLYTDDVSLLVVLIDTNPYFWSTNNSGLPYSKFLSHLVAFLNSILLLNQLNQVV
GIATGVNSCGYIYDSSLAPPNKRAETLLQKLEEFVIKDEELSAEDSVDGIKSSLLSGSLS
MALCYIQRVLRSGSLHPQPRILCLHGSPDGPGQYVAVMNSIFSAQRSMLPIDSCVIGAQH
SAFLQQASHITGGIYSKPQQLDGLFQYLSTLFATDLHSRSFIQLHKSVGVDFRASCFCHK
STIDMGYICSVCLSIFCKPHKKCSTCGSTFGQPQATVSPTNLKRKAPDS
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgactccggtttccagaaagctttacacagatgacgtcagtcttttggtggtgttaatt
gacaccaatccatacttttggagcacaaataacagtggccttccatactccaaattcctt
tctcatcttgtagcatttttgaactcaatacttttgctcaaccagcttaaccaagttgtt
ggtattgctacgggggtcaattcctgcggttacatatatgattcttcattggcacctcca
aataagagagctgagactttgttgcagaagttagaggagtttgtgattaaagatgaagaa
ttaagtgctgaagattcagttgatggaatcaagtcttcgttgctatcagggtctctttca
atggctctttgttatatacagcgggtattgcgatctggctcacttcatccacagcctcgg
atactatgcttgcatggatctccagatggacctggacaatatgttgcagtcatgaattca
atattctcagcacaacgctcaatgctacctatagattcctgtgttataggagctcagcat
tctgcttttctgcagcaggcttctcatataactggtggtatatattcgaagccccaacaa
ttggatgggctgtttcagtatctttcgacactatttgctacagatttgcattctcgtagt
tttatacaactccacaagtctgtcggtgtggattttcgtgcctcgtgtttttgccacaaa
agcacaattgatatgggctacatatgttctgtctgtttgtctatattttgcaagcctcac
aagaagtgctcaacatgtgggtcaacttttgggcaacctcaagcaactgtttctcctaca
aatttgaagagaaaagctccggattcatga
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