KEGG   Daucus carota (carrot): 108222325
Entry
108222325         CDS       T05350                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
dcr  Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:dcr03009]
    108222325
Ribosome biogenesis [BR:dcr03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    108222325
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR75_1st WDR55 Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_Vps41 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd NBCH_WD40 Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st Beta-prop_IP5PC_F ANAPC4_WD40 Beta-prop_IFT122_1st Beta-prop_HPS5 VPS8_N Beta-prop_WDR19_1st Beta-prop_SPT8 Beta-prop_LRRK2 Beta-prop_SCAP WDR54 Beta-prop_DCAF4 Beta-prop_VPS8 Beta-prop_NWD2_C
Other DBs
NCBI-GeneID: 108222325
NCBI-ProteinID: XP_017251734
LinkDB
Position
5:2921039..2925129
AA seq 501 aa
MLSHAVSCLSEPGLPESYYILTRIGEVKETGMNSREREGLVVCGDRNLGVGLTIYDIESG
DRSLHISTCASPRYGVTCLRNQYLVASQIHRPGCVAGGIIFTWSLNKTQAPLRSYTVEVI
GPLCCTKDGVYLAGGAPSGTIYIWEVTTGKLLKTWHGHNKSLTCLLFSDDGSLLISGSED
GMVVVWSMISLLDPMNNESCSSVLSCLSAHTSSVTGLLTTSCGLSSVFLSGSLDGSCKAW
DIFSGTLLQTRTFATPITAIVVDPEEKLLISGSSDGRIFVNTIEVGLLEDPYHISDDQQI
VLKGHTESITALTFCGLGLISASEDCTACLWDVVDWVIIRTFEHQKGAISNLLVMPQSSL
VPLKSHQRPSNSFRCSLLEKYTQASPTSNGMAPLLPSRDHEIMEEYCTTDLLNQHITDLQ
EDHTVEAMQMKVDTNVENRAWITTMTKHTMRMNKQLQVKLLDIAEHRLKELEKTESPADE
PKKKKTKENGPPIDGGKQPQH
NT seq 1506 nt   +upstreamnt  +downstreamnt
atgttgagtcatgctgtgtcctgcttgtcggagccgggcttaccagaatcgtattatatt
ttaacgagaatcggagaggtaaaagaaacggggatgaatagcagggagagggagggacta
gtggtgtgtggtgacaggaatttaggtgttggactcacaatttatgacattgagagtgga
gatcggtctcttcacatatcaacttgtgcttcaccacgctatggagtcacttgtcttagg
aatcagtatcttgttgcttctcagattcacaggcctggttgtgttgctggtggcatcatt
ttcacctggtccttgaacaagactcaggcgcctctgcgtagctacacagtggaagttatt
ggaccgctttgctgcacaaaggatggagtttatcttgcaggtggagctccttcgggaact
atatatatttgggaggtaacaactggaaaacttctcaagacatggcatggtcataataag
tcgctgacatgtttgctgttttctgatgatggttctcttctcatatctggctctgaagat
gggatggttgttgtctggtcaatgatcagtttgctagatccgatgaacaatgaaagttgc
agttctgtactaagttgtttatcagcgcatacatcctcagtaactggtctgttaactaca
tcatgcggcttaagctcagttttcttgtcaggctctcttgatggctcatgcaaggcatgg
gacatatttagtgggacacttctacaaactcgaacttttgccactccaataactgcaatt
gtcgtcgatccagaagagaagcttttaatctctggaagttcagatggaaggatcttcgtg
aacacaattgaagttggattgcttgaggatccttatcacatttctgatgatcaacaaata
gtcttaaaaggacacacggaatcaattactgcattaaccttttgcggattgggtctcata
tctgcatccgaggactgcactgcttgcctgtgggatgttgtcgattgggtgatcattaga
acatttgaacatcaaaaaggagccatatctaatctgcttgtgatgcctcaatcgtcactg
gttcctctaaagagccatcaaagaccatctaattccttccgttgttcattgcttgagaag
tacactcaagcatctcccacgtccaacgggatggcccccctcttaccatcacgagatcat
gaaatcatggaagaatattgcaccactgatctactaaaccaacatatcaccgacttgcag
gaagaccatacagtagaagcaatgcaaatgaaagtggacacaaacgtagagaaccgggca
tggattacaacaatgacaaagcatacaatgagaatgaacaagcagttgcaggtaaagtta
ctagatattgcagagcatcggcttaaagagcttgagaagaccgaatcgcctgcagatgaa
ccaaagaagaaaaagaccaaggaaaacggtcctcctatagatggaggaaaacagcctcaa
cattga

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