Daucus carota (carrot): 108222481
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Entry
108222481 CDS
T05350
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108222481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108222481
04121 Ubiquitin system [BR:
dcr04121
]
108222481
03036 Chromosome and associated proteins [BR:
dcr03036
]
108222481
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108222481
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
108222481
Ubiquitin system [BR:
dcr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
108222481
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
108222481
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
108222481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT_2
BRCT
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
Prok-RING_4
zf-RING_6
zf-RING_2
RTT107_BRCT_5
zf-RING_10
EGF_laminin
zf-RING_4
RING_XB3-XBAT31
DotA
Sina_RING
U-box
Motif
Other DBs
NCBI-GeneID:
108222481
NCBI-ProteinID:
XP_063950090
LinkDB
All DBs
Position
5:35992594..35998281
Genome browser
AA seq
538 aa
AA seq
DB search
MMSENNDERVLNPWLLHLHKLSLALKCPICMELLDEPVLLPCDHLLCNSCICKQSKKGSK
CPACQTNYVGRDTRSAFFMENVIAVFKSLCSTSLADTCHPLASDVAKLSEKSPASAITNQ
EILEESVETFAEENSINGKSMSSLKGSKTHAQICLKGDTSGRKEDRSLQSQPPGHLKNGN
LIKIAVKTVKMNQKRLSVGRTRSLREIYKDAKRQKILKSPEAYNDECGYCHTFEVEKGQI
LRHENRELVPGDASSSRINNVQNACIIRIPKQPDFWSTSCDGVKTWVFCGSALSSTNLCY
LVKFARCCGATVTRFWRPDVTHVITATDANSSCTRTLKVLMAILYGQWIISMDWIKSCAK
ANKPMNEEPYEVTLDNHGARDGPKTGRHLTLDNASTNLYYEKTKYITIRIMCIIDIIIQL
RSGPKLFGSLIFYFSGDFDSGLMNDLKTLVLAAAGTIIENKEHLVSQTCVAEGTSKILIV
YNADHTYHCTTGDEDSPVVEILETAENLALRIGSRIIQHTWILESIAACKLQPLPCYW
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcggaaaataacgatgagagggtgctgaatccatggcttcttcacctgcacaag
ctctccttagctctcaaatgccccatctgcatggagttgcttgatgaacctgttttgctc
ccgtgtgatcacttgttgtgcaattcatgcatttgtaaacagagcaaaaagggttcgaaa
tgtcctgcttgccaaacaaattatgttggtcgagatacacgatcagcattttttatggaa
aatgtgatagcagtcttcaaaagcttgtgttcgacttcccttgctgacacatgccatccg
cttgcttctgatgttgcaaaactgtcagagaagtctcctgcatcagctataacaaatcag
gagatactagaggagtctgttgaaacatttgcagaggaaaattccatcaatggaaaatct
atgagttccttgaaaggtagtaaaacgcatgcacaaatttgcttaaaaggagatacaagt
ggtagaaaagaggacaggtcactgcagtcccagcctcctggtcatctgaaaaatgggaat
ctaatcaaaattgctgtgaagacagtaaaaatgaaccaaaaacggctgtcagtaggcagg
actcgctccttgagagagatctataaggatgccaagagacaaaagatattaaagtcacca
gaagcatacaatgacgagtgtggctattgtcatacttttgaagtggagaagggtcaaatt
ttacgtcatgaaaatcgagagttagtacctggagatgcgtcttcctctaggattaataat
gttcaaaacgcttgcattattcgtatccctaagcagccagatttctggtcgacatcgtgt
gatggagtaaagacttgggtattctgtggatctgctctgtcttccacaaatctgtgttat
ctcgtcaagtttgctagatgttgtggtgcaaccgtgacaaggttttggagaccagatgta
acccatgtaattactgccacagatgcaaatagttcatgtacgaggacactgaaagtcctc
atggcaattttatacggacaatggatcatctctatggactggataaaatcttgtgcgaaa
gcaaacaaaccaatgaacgaagaaccttatgaagtcacgctagacaatcatggagctcgc
gatggccctaagaccggcagacatctgactttggataatgcaagtacaaatctttactat
gaaaaaacgaaatatattaccataagaataatgtgcatcattgatataattatccaattg
cgctcagggccaaaactttttggtagcctgatattctacttcagtggagattttgactcg
ggtctcatgaatgacctcaaaactttggttctcgctgctgctggtactattattgagaac
aaggaacaccttgtctcacaaacttgtgttgccgagggaacctcaaaaattctaattgtg
tataatgcggatcacacatatcactgcacaacaggagatgaagattcacctgtggtggaa
atactagagactgcagaaaatttggctctcagaattggttccagaattatacaacacacg
tggattttggaatcaattgctgcgtgtaagttgcagcctttgccctgctattggtga
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