Daucus carota (carrot): 108222514
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Entry
108222514 CDS
T05350
Name
(RefSeq) putative pectate lyase 21
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr00040
Pentose and glucuronate interconversions
dcr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108222514
Enzymes [BR:
dcr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108222514
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
108222514
NCBI-ProteinID:
XP_017251922
UniProt:
A0A164ZH27
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Position
5:42154387..42156937
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AA seq
357 aa
AA seq
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MNLLPYSDADSSLRALAGKAEGFGRSAIGGLRGSLHFVTSLNDDGPGSLREACRKTEPLW
IVFNVSGDIHLSSYLNVSSFKTIDGRGSRVRLLGKGLRLKECEHVIICNLEFEGGRGHDV
DGIQIKPNSKHIWIDRCSLQDYDDGLIDITRESTDITVSRCYFANHDKTMLIGADPSHTG
DRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWEVYAVCASVESQVYSQCNIYEA
GEKKKAFEYYSEKAADKDEPDTGLIRSEGDMFLNGAEGCPSPKQNDGSVFHPSEYYSTWT
FESAADSLKHLLQASAGWQSVARPAALCCGELGEKPANQCCGSSENTDQFSNLSTNI
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atgaatttattgccgtactctgacgcggattcgagcttgagagctttggccggtaaggct
gagggtttcggccgatcagctattggtggtctccgtggatccttgcattttgtcacctca
ttaaacgatgatggaccaggatcacttcgcgaagcatgtcgcaagacagagccactctgg
attgtgttcaatgtttccggggacattcatctttcatcttacctcaatgtgtcttcattc
aagacaattgatggtcgaggcagccgtgtgagactcctgggcaaaggtctcagactaaag
gaatgtgagcatgttattatctgcaacctggaatttgaagggggtagaggacacgacgtt
gatggaatccagatcaaaccgaactcgaagcacatttggatagaccgatgtagtttgcaa
gactatgatgatgggctgatagatatcactagagaaagcacagatattactgtttctaga
tgttacttcgcaaaccatgacaagactatgcttatcggagcagacccttctcataccggt
gatagatgtatcagagtgactattcatcactgtttttttgatggaacacgacaaaggcaa
cctcgggttcgatttgggaaggttcatctttacaacaactacacaagaaactgggaagtg
tatgctgtttgtgctagtgtagaatcacaggtatactctcaatgcaacatatatgaagca
ggagagaagaagaaagcttttgaatattactcagaaaaggcagctgataaagatgaacca
gataccgggttaataaggtccgagggggacatgttcttaaatggtgccgaaggatgtcct
tcaccaaaacaaaatgatggaagtgtattccatcctagtgaatattactcaacttggacg
tttgaatcagctgcggattctctgaagcatttactgcaagccagtgcaggctggcaatct
gtagcccgaccggcagccctttgttgtggtgaactgggtgagaaaccagcaaatcaatgt
tgcggtagctctgagaatacagatcagtttagcaacctgtctacaaatatttag
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