Daucus carota (carrot): 108222542
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Entry
108222542 CDS
T05350
Name
(RefSeq) exopolygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr00040
Pentose and glucuronate interconversions
dcr01100
Metabolic pathways
Module
dcr_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108222542
Enzymes [BR:
dcr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
108222542
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Pectate_lyase_4
Motif
Other DBs
NCBI-GeneID:
108222542
NCBI-ProteinID:
XP_017251944
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Position
5:complement(33792334..33794290)
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AA seq
425 aa
AA seq
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MARTREFKLTTTLLIALAISSIVVEAKPFHHFKDHLPVKLGLAGAPVAPGGEAVFVITNY
GAKPDGKSDSSMSFQKAWKDACNSNGPARVVVPAGTFKTGEIIFTGPCTAAPITFEVQGT
MLGSEDVSMYSQNQWITIEHVNNVIVTGPGTLDGLGASTWKLKDDSFGGGVRLPDSLVFF
ASNNSVAQNFASVNSKGFHIKVLQSVNVTVQNVTITAPGDSPNTDGVHVSRSENVNVLDS
TIGTGDDCVSIGAGNTNVTVARIVCGPGHGLSVGSLGKWQDETDLRGVTVTNCTLTNTTN
GARIKSYRQSPSLSASGIIFDDLVMNGVHNPIIIDQNYDSMNLQQGSNVKLSDIHFRNIR
GTSLTNVAVTLNCSSTFPCEGVELVDIDLSYAGAPSQDSLPVQSACQNVKPTVSGIMNPP
ACPAR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggctcgaaccagggaatttaagctcacaactacattgttgatagctctagctatctct
tcaattgtagttgaagctaaaccattccatcattttaaagatcacctgccggtaaaatta
ggccttgctggtgcgcctgttgcaccaggaggcgaagctgtttttgttatcaccaactac
ggggcaaaacctgatggaaaatccgatagctcaatgtcgtttcaaaaagcatggaaggat
gcatgcaactcaaacggaccagcaagagttgttgtcccggcgggaacttttaagacaggg
gaaattatattcacaggaccatgcacagcagcgccaataaccttcgaggttcaaggaacc
atgttagggagtgaagatgtgagcatgtactctcaaaatcagtggatcaccattgagcac
gtgaacaatgtcatcgttactggccccgggactcttgacggactaggtgcatcgacatgg
aaactcaaggatgatagctttggtggtggtgtccggcttcctgattcgcttgtgtttttc
gcttcaaacaactcagtggcgcagaacttcgcctcagtaaacagcaaaggcttccacatc
aaggtgcttcaaagtgtcaacgttacggttcaaaatgtgacgatcaccgcaccaggagat
agcccaaacaccgatggcgtccatgtaagtcgttcagaaaatgtaaatgttctggattcg
acaattggaaccggcgatgattgtgtttctattggtgccgggaacaccaacgttaccgtc
gcaagaattgtatgcggccccggacatggacttagtgttggaagcctcggcaaatggcaa
gatgagaccgatttgagaggagttactgtcactaattgtacactgacaaatacaacaaac
ggagccaggatcaagagctatcgccagtcaccttcgctaagcgcctctggcattattttt
gatgatttagtgatgaacggtgttcacaaccccatcattatagaccaaaactatgactca
atgaacctgcaacagggatcaaatgtcaagctttccgacattcacttcaggaacattagg
ggtacttctctgacaaacgtcgcagtcactctcaactgcagtagtacattcccgtgtgaa
ggtgtcgagttggtggacattgatctctcatatgcaggggctcctagtcaagacagcttg
cctgttcaatccgcttgtcaaaacgtcaagccaactgtcagcggcataatgaacccccct
gcttgtccagcacgataa
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