Daucus carota (carrot): 108222676
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Entry
108222676 CDS
T05350
Name
(RefSeq) uncharacterized protein LOC108222676 isoform X1
KO
K19026
spatacsin
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108222676
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
108222676
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
108222676
NCBI-ProteinID:
XP_017252052
UniProt:
A0AAF0X197
LinkDB
All DBs
Position
5:6204615..6237685
Genome browser
AA seq
3217 aa
AA seq
DB search
MDAPALLQLHKWGPDVHLNVSQFREAFMSPTRHLLLLLSYQCEAMLLPLGEGLASISASS
SLEESFAPDRADSKVNIASTSESIKMVSDNSIPSDNHDLNPSNHHPFISDVHSLAWGICE
ETYGSQDTALARDLLFVCGNHGVTVHVFARPSKDSEVTKPAMESEHRQGVWVEWGPSITP
PCSKTAQKSSSLHVETSGEVVKESKTDVIAREDGKLKNMSQKRWLRTFLTKPEMIKSEGI
IYTMLPEMSSLPSTTMINSFGLFGSDSKSSHFQTDTQPKSHIDGEKNDSVLDVVNNAYSH
GDSSSSGKVISPDALLKFLTGSISSSYICSTVFSSNSNHMIGFVLMLVDPVPADPSDKHE
IDEEKIVIVVAKMVSSGIQWVCLARLAEIVDRGPIVEWTDFKFSDDFLICLNAVGLIYFY
SATTGEYVAHLDLLQSNGFSPQFNYKDCEKFQKGDDAPTSTGIEGEINGIQSSHDIPSKS
IFRRLLLASHTTLLAVTDVHGVVHVICVENHLQGKDHMLKKSLKSFQDFNMRTLVGWEVG
GAEIGCQRTFSDTWPSLLSVHKYYFTGNMGYNEFPGLQVFGEKTGGCKSVLSGFSVGSQT
VETEYPSSSFPRAVRNLFLPTQRSEEGNVLCFSAFGIIRLTKKKNKERCSQIVCSSLHVG
SATMNDLSTNSKGLDISIGEAVGCTYKGGCYLVTEDGLSVVLPSMSVSSNFFPVEAIGHR
QKTVSTAATASQAGILFETKEIKKQSFLPWKIELLDRLLLYEDSEEADRLCLENGWDLKI
SRIRRLQLALDYLKFDEIEISLEKLVDVNLAEEGILRLLFVAAYLMFDKISNDNEVSAAS
RLLALATCFATKMIRKYGLLQHRSDNFMTWSVNRIEDCHLPLLLENDYNEKEYNKMGNSS
RLHEMAHFLEIIRNLQSRLNSKIKRPAQSSVDAPDASKIYTDLSKDETELPTNESSYEKL
NQHELPFPGADFESRGVKKLASMSADPLETRTHMNSDNTSRSTGSDSAIVVSGRKVLPLE
NTKDMIARWELGNLDQRNVVQDALLSGRLPLAVLKLHLHRAHNLIGDKEPHDTFSEVRDI
GRAIAYDLFLKGETGLAVTTLQKLGEDIELCLRQLTFGTVRRPLRLQLAAEMTKYGYIGP
YEGDILERMSLIERVYPCSNFCRTYCGRKEVFFPDINISSPEEISLHLLHPTVDNTVLFC
GEIDGAVLGSWNDVSEHPIVPVLDDDSAHSCYWAGAAVWSDAWDQRTVDRIVLDQPFLMG
VNVSWESQIEYHICHNDWVEVYELLDVIPSYLFSNGTIRISLDGLHPTSAVGYSTEFSKY
NSYISSIEELDAVCLEIPDMKVIRFSSYNMCSTWVRLLINQRLARRLIFPKEYWEGTAEI
VRLLARSGYMTNTYETSSLDDSVEGSSDSNILSLSGTVHPGAAQLLHKVVVHNCAQYKLP
NLLDLYLDYHKLALDNASLSVFQDAVGDDQRDKWLLFLRVEGHEYDASFANARFIASKSM
VPGNRLGVCEIDDILCTVDDIAEGGGEIAALATLMYAPMPFEDCLCSGSIIRHSSSSAQC
TLENLRPALQRFPTLWRMLVTACFGQDPTCSYLNPTRKEFVSSQLSDYLNWRDSIFFSSS
HDTSLLQMLPSWFSKSVRRLIKLYVQGPLGCRSLSGLPRGETLPVKDIEYLVNANENVEI
SAMTWETAIHKHVEEEFYASSTKESGLGLEHHLHRGRALAAFNHLLSIRVQKLKPENVQR
VQSGSSVHGQTNVQSDVHTLLAPITQSEESILASVMPLAVMHFQDSLLVASCAFLLELCG
LSAYMLRIDIAALRRISSFYKSNAQSDYIQLSPSGLAFDPISPEDDIAYSLGRVLADDYV
DRDSAGIKKKPEVIGSITTKRPSRALMLVQQHLEKASLPLLTDGMTCGSWLSSGNGDGTE
LRSQQKDASLYWSLVTTFCRVHQIPLSTNYLALLARDNDWVGFLSEAQVGGYPFDTVIEV
ALKEFNDNRLKLHILTVLKGMQSRKKVSTLSNSDITEERSTSVGDFCMPAEVFGIIAECE
KRENPGEALLLKAKDLCWSILAMIASCFPDVSPLSCLTVWLEITAARETSSIKVNDVASQ
IASNVGAAVEATNATLVASGEVACHYNRRNAKRRRIMEAVEPLMSKVSDVSISRSEGIIA
AQGSVFEDDKNQTGDVFSVSNNTAEPSVSLSKMVALLCEQHLFLPLLRAFEMFLPSCSLL
PFIRALQAFSQMRLSDASAHIGSFSARIKEEQIHVQMNNGTDGIGSAWISSIAVKAADAM
LSKCPSPYETRCLLQLLSSADFGDGGFASANYKRQHWKINLAEPSLREDDGLHLGDDILD
DVSLLRALEENGHWEEARNWAMQLEATGGKWKCIGHHVTETQAESMVAEWKEFLWDVPEE
RVALWAHCQTLFIRYAFPPLQAGCFFLKHAEAVEKDLPARELHELLLLSLQWLSGMITHS
DPAYPLHLLREIETRVWLLAVESEAHIKSDGDFSLTSCISEPGTGKSSNIIECTACLIAK
MDNHISAMRIKSTDSIDTREISHTHQKIPQLTNDNNLHGSNGGMKIKKKAKAFLSSKRQI
VDVVEKNINSEESSTSLDSQKDLHLPDENLRMDVSSSRWEERVGPAELERAVLSLLEFGQ
ITAAKQLQQKLSPGKIPSEFVLVDTALKLAVLSTPNSEVSMSMLDDELSSVIQSYNLVND
RYMVYPLQVLENLAISFTEGRGCGLCKRIISIVRAANVLGVPFSEAYDKQPVELLQLLSL
KAQDSFDEANLLVQTHTMPAASVAHILAESFLKGLLAAHRGGYMDSQKEEGPAPLLWRFS
DFLKWANLCPSEPEIGHALMRLVITGQEIPHACEVELLILSHHFYKSSACLDGVDVLVAL
AATRVEAYVLEGDFSCLARLITGVGNFHALNFILGILIENGQLDLLLQKYSAAADSNSST
AEAVRGFRMAVLTSLKQFNPNDLDAFAMVYNHFDMKHETASLLESRAQQSSQQWFYRYDK
DQNEDLLESMRYYIEAAEVHSSIDAGNKTHASCAQASLVSLQIRMPDFKWLKLSETNARR
ALVEQSRFQEALIVAEAYGLNQPSEWALVLWNQMLKPELTEQFVAEFVAVLPLHPMMLAE
LARFYRAEVAARGDQSQFSVWLTGGGLPAEWAKYLERSFRCLLKRTRDLKLRLQLATIAT
GFIDIIDVLTKALDRVPENAGPLVLRKGHGGAYLPLM
NT seq
9654 nt
NT seq
+upstream
nt +downstream
nt
atggacgctcctgctctacttcagttgcacaagtggggacctgatgtgcatctcaacgta
tcgcaatttcgggaggcttttatgtctcccaccaggcacctactgttactgctttcgtat
cagtgcgaggctatgttgcttcctcttggggaaggtctagcttcgatttctgcatcttct
tctttggaagagtcgtttgcccctgatagggcagattcaaaggtgaatattgcaagtacc
tctgaatcaatcaagatggtatctgataatagtataccttccgacaaccatgatctcaat
cccagtaatcatcatccttttatttctgatgtacactcacttgcatggggtatttgtgaa
gaaacctatggtagccaagatacagctttagctagagatcttctttttgtttgcggaaat
catggagtaactgtccatgtttttgctcgacccagtaaagacagtgaagtgaccaaacca
gctatggagagtgagcatcgtcaaggggtatgggtggagtggggaccatctattactcca
ccatgcagtaagacagctcaaaaaagttccagcttgcatgtggaaacctctggcgaggta
gttaaggaaagtaaaactgatgtaattgccagggaggatgggaaattaaaaaatatgtct
caaaagagatggttgcgtacattcctaaccaaacctgaaatgataaaatctgaaggtatt
atatataccatgctaccggagatgtcatcgctaccttccacaacaatgataaattcattt
gggctttttggtagtgattctaaatcttcacactttcagactgatacgcaaccaaaatct
catatagatggcgaaaagaatgattcagttttagatgttgtaaacaatgcatattcacac
ggggattctagttcttccgggaaagtaatttcccctgatgctcttttgaagtttttgact
ggtagtataagtagttcatacatatgctctacagtgttctctagcaactcaaaccacatg
attgggtttgttttgatgttagttgatcctgtacccgctgaccccagtgataaacatgaa
atagatgaagaaaaaattgttattgtcgtggctaaaatggtcagctctggaatacagtgg
gtttgcttggcaaggcttgctgagattgtagacagaggccctatagttgaatggacagac
ttcaaattttcagatgattttctcatttgtcttaatgcagttggtctaatatacttctac
tcagctacaaccggtgaatatgtagcacatctggatctcttacaaagcaatggtttttct
cctcaatttaattataaagattgtgaaaagtttcaaaaaggtgatgatgcccccactagt
actggcattgaaggtgaaatcaatggtatccaatcctctcatgatattcctagcaaaagt
atatttaggagactgctacttgcatcgcacaccacactcttggccgtaacagatgtgcat
ggtgtagttcatgtaatatgtgttgaaaatcatttacaagggaaagatcacatgcttaag
aaatcacttaaaagttttcaggattttaatatgaggactttggttggttgggaggttggt
ggggctgaaattggctgtcagaggacgttttctgatacatggccatccttgctatcagtt
cataaatattattttacaggtaacatgggctacaatgaatttcctgggcttcaggttttt
ggggaaaaaacaggtggttgtaagtcagtacttagtggtttctcggttggatcccaaaca
gttgaaacagaatatccttcctcttcatttcctcgtgctgtaaggaatctttttcttcct
acccaaagatctgaagaaggcaatgtactttgtttttctgcctttggaattataagactt
actaaaaagaaaaataaagagaggtgttcccagattgtttgttccagtttgcatgtaggt
tcagctacaatgaatgatttaagcacgaattcgaaaggtttggatatttctataggcgaa
gctgtaggttgtacctataaaggtggttgttatttggtgactgaagatggtctatcagta
gttcttccatccatgtcagtttcttctaatttctttcctgttgaagctattggtcatcga
cagaaaactgtcagtactgctgctactgcttcccaagctgggatcctctttgaaaccaaa
gaaatcaaaaagcagtcttttcttccctggaaaatagagctgttggatcggctactctta
tacgaggactctgaagaggcagatcgcttgtgcttggaaaatggctgggacttgaaaata
tctcgaattcgccgcttgcaactggctttggactacctgaaatttgacgagattgagatt
tcattagagaagcttgtggatgtcaatttggcggaagaaggcatcctgaggctgcttttt
gttgcagcttacttgatgtttgataaaattagtaatgataatgaggtttctgcggcatca
aggcttttggcattggccacctgctttgcgaccaaaatgatacggaagtatgggttgttg
cagcatagaagtgataacttcatgacatggagtgtaaacagaatagaggattgtcattta
ccattgttactggagaatgattacaatgagaaggaatacaataaaatgggaaactcaagt
aggcttcatgagatggctcactttcttgaaatcataagaaatctacaatctcgactcaat
tctaaaatcaaaagaccagctcaaagttcggtggatgctccggatgcatcaaagatatat
acagatttatcaaaggatgaaactgagcttccaacaaatgaatcatcatatgaaaagttg
aaccagcatgaacttccttttcctggagctgattttgaatctagaggtgtgaagaaacta
gcttcaatgtctgctgaccccttggagacaagaacacatatgaactctgataatactagt
agatcaactgggtctgattctgctatagtcgtgtcaggaaggaaagttttacccttggaa
aatacaaaggatatgattgcgcgttgggaactgggtaatttggaccagcggaatgttgtt
caagatgctctactttctggccgtcttcctctagctgttctcaaattgcatcttcatcga
gcacacaatttgatcggtgacaaggagcctcatgatacttttagtgaagtccgtgacatt
ggaagagctattgcttatgatctttttttaaagggtgaaacaggattagctgtaacaaca
ttgcaaaagctcggtgaggatattgaactttgtctcagacaattaacttttggcactgta
agaagaccacttcggctgcagctagctgctgagatgacaaaatatggttatattggacca
tatgagggggatatattggagaggatgtcactcattgagagggtctacccttgcagtaat
ttttgcagaacatattgtggccgcaaggaagtcttctttccagatattaacatcagctca
cctgaagaaattagcttgcatctgctgcatccaacagttgataacactgtccttttctgt
ggtgagatcgatggagctgtattaggttcctggaatgatgtgagtgaacatcctatagtt
cctgtgcttgatgatgacagtgctcattcttgctactgggctggagctgcagtatggtct
gatgcatgggatcaaagaactgttgatcggatagtgctggatcaaccatttctaatgggt
gttaatgtgtcatgggagtctcaaattgagtaccacatatgccacaacgactgggttgaa
gtttatgaactccttgacgtgattccatcatatttattttccaatgggactattcgaatc
agtttggatggtttacacccaacttcagctgtaggatatagtacagagttcagtaaatac
aatagctacataagctcaattgaggagttagatgctgtgtgcctggaaattccagatatg
aaagtgatcagattttcttcatataatatgtgctcgacgtgggtgagattgcttattaac
cagcggcttgccagaagacttatttttccaaaggaatactgggaaggcacagcagagatt
gttcgtcttctagctcggtcaggatacatgactaacacatatgaaacctcatcgttagat
gattctgtcgagggttcatcagattcaaatattttaagtttaagtggaacagtgcatcct
ggagcagcacaacttctgcataaagttgttgtacataactgtgctcagtataaattgccg
aacctcctcgatctttaccttgattaccacaagttggctctggataatgcttctctctcg
gtattccaagatgcagtgggagatgatcaaagggacaagtggttgctctttctaagagtt
gaagggcatgagtatgatgcgtcattcgctaatgcccgttttattgcatcaaaaagtatg
gttcctggtaatagactcggtgtttgtgagattgatgacattctctgtactgttgatgat
attgctgaaggaggaggggagattgcagccttggcaaccttaatgtatgcgcctatgcca
tttgaggattgtttatgcagtggaagtataattaggcactctagctcctccgcacaatgt
acactggaaaatcttagacccgctctccagcgcttccctacactgtggaggatgctcgtg
acagcatgctttgggcaagatccaacttgcagttatttgaatcccactagaaaagagttt
gtcagttctcagttatcagactatctgaactggagggacagcatcttcttctcatctagt
catgacacttcacttctacagatgcttccttcctggttttctaagtccgttcgcagatta
attaaactctatgttcagggtcctctagggtgtcgatcattatctggtcttcccagggga
gaaactttgccagtgaaggatattgagtatttagttaatgctaatgagaatgttgagata
agtgccatgacctgggaaactgctatacataaacatgttgaagaggagttctatgcttca
tcaactaaggaaagtggacttggacttgagcatcacttgcacagagggcgtgctttggca
gctttcaaccatcttctttctattagagttcaaaagttgaagcctgaaaatgttcaaaga
gtgcaatctggcagttccgtacatgggcaaacaaatgttcagtcagatgttcatactcta
cttgcaccaataacacaaagcgaggagtctattctagcatctgtcatgccccttgcagtg
atgcattttcaggattctttattggttgcttcatgtgcttttcttttagagctatgtggt
ttgtctgcctacatgctccgaatagacatagcagctctgagacggatatcttctttctac
aagtctaatgctcagtctgactacatacaactgtcaccttcaggtttagcatttgatcct
atatcacctgaagatgatattgcatattctcttggtcgagtattagcagatgattatgtg
gaccgtgatagtgctggaatcaagaaaaaacctgaagtcataggtagcattaccaccaaa
agaccttccagagctctcatgcttgtccaacagcatttggagaaggccagcttgccactg
ttgactgatggaatgacatgtggttcctggctatctagcggtaatggtgatggaactgag
ctacggtcccagcagaaagatgctagcctgtactggagtttagtaacaactttttgtaga
gtgcatcagattcccttgagcactaactaccttgctctgttagcaagagacaacgattgg
gttggatttttgtcagaagctcaggttggaggatatccttttgatacagtgattgaagta
gcattaaaggaattcaatgacaatcgcctcaaacttcacatacttacagttttgaagggg
atgcaatcaagaaagaaagttagcactttgtcaaattctgatattacagaagaaaggagt
acttctgtaggagatttttgtatgcctgctgaagtctttggaatcattgcagagtgtgag
aagagagaaaatccaggagaggctctgctgttaaaagcgaaggatctgtgctggtcgatt
ttggcaatgattgcatcatgttttcctgacgtgtctccgttgtcctgcctaacagtttgg
ctggaaattactgccgccagggaaacttcatctatcaaggtgaatgatgtagcatcccag
attgcgagtaatgttggagcagctgtggaggctactaatgctacgcttgtagcaagtgga
gaagttgcatgtcactataatcgtagaaatgcaaaacgtagacgtataatggaggcagtg
gaacccttaatgtcgaaagtatctgatgtgtctattagtaggagcgagggaataattgct
gcccaaggtagtgtttttgaagatgataaaaaccaaactggcgacgttttttccgtgtct
aataatacagctgaaccatctgtctctttatcgaaaatggttgcattgctttgcgaacaa
catctatttcttcctctattaagagcttttgagatgttccttccttcgtgctctctcttg
ccatttatccgtgctctacaggcattctcccagatgcgcttgtcagacgcttcagcacat
ataggttcattctctgctagaatcaaggaagaacagatccatgttcaaatgaacaatgga
acagatggtattggaagtgcgtggataagttcaattgctgtgaaagctgctgacgctatg
ctttcaaaatgcccatcaccttatgaaacgaggtgtctattacagcttctttcttctgct
gactttggtgatggaggattcgcttcagcaaactataagaggcagcactggaaaattaat
ttagcagaaccttcactgagggaagatgatggtttacaccttggggatgatattctagat
gatgtttcacttctaagagctttagaagagaatggacactgggaggaagcacgcaactgg
gctatgcagttggaggccactggtggaaaatggaaatgtattggacaccatgtgactgaa
acccaggccgagtccatggtggcagagtggaaggagtttttgtgggatgtcccagaagag
agggttgctctttgggcccactgccaaacacttttcatcagatatgcttttccaccgtta
caggctggttgtttttttctcaaacatgcagaagctgtggagaaagatctacctgcaaga
gagcttcatgaacttttgcttctttctttgcaatggttgagtgggatgattacacattct
gatccagcttatccgttgcaccttttgcgagaaattgagaccagagtttggctcctggca
gtagagtcagaagctcatataaagagtgatggcgatttctctctaaccagttgtattagt
gaacctggtaccggaaaaagttccaacattattgaatgcactgcatgtctaatagcaaaa
atggataatcatataagtgcgatgagaattaaatcaacagacagtattgacacaagggag
attagccatacacatcaaaaaataccacaacttactaatgacaacaatttacatggttct
aatggtggtatgaagataaaaaagaaagccaaagcattcttgtcatcaaaacggcagata
gttgacgtggtggagaaaaatattaattctgaagaaagttcaacatctcttgattctcaa
aaggacctgcatctgccagatgaaaaccttagaatggatgtatcttcttcaagatgggag
gagagggttggacctgcggagttggaaagggctgttctttctttattggagtttggacaa
attacagctgcgaaacaactacagcagaaactctccccaggaaaaataccgtctgaattt
gttttagttgatactgctttaaagcttgcggtcctctcaacacccaatagtgaagtgtcc
atgtcaatgttggatgatgaactaagttcggttatacagtcatacaatcttgtgaatgat
cgttatatggtttatccgcttcaggtattggagaatttagcaatcagtttcactgagggt
agaggatgtggtctatgcaaaagaattatttctattgtgagggctgccaatgtcttgggt
gttccattttcagaggcttatgataagcaaccagttgaattgctgcagcttttgtccctt
aaagcacaagattcttttgatgaagcgaatttacttgtgcagactcacactatgccagct
gctagtgttgcacatattcttgcagaatctttcctaaagggcttattggctgcacaccgt
gggggatatatggattctcaaaaggaggaaggacctgctcctctactttggagattttca
gacttccttaagtgggcaaatctctgtccatcagaacctgaaattggccacgctctgatg
cgattagtgattactgggcaggaaataccgcatgcctgtgaggtcgaacttcttattctc
tcccaccacttttacaagtcatcagcctgtcttgatggagttgatgttctagtagccctt
gcagccaccagggttgaagcttatgttttggaaggtgacttttcatgtttggctcgcctt
ataactggtgttgggaactttcatgccctcaacttcatactgggaattcttattgagaat
gggcagctggatcttcttcttcagaagtattctgctgctgcagactcgaactccagcact
gctgaggccgttagagggtttcgaatggctgttctgacatcactgaagcagtttaatcca
aatgaccttgatgcgtttgctatggtttataatcattttgacatgaaacacgagactgct
tctcttctagagtcacgagctcagcaatcatctcaacagtggttctatcggtacgacaag
gatcagaatgaagacctcctggaatccatgcgctattacattgaagcggctgaagttcac
tcctccattgacgctggcaacaaaacacatgcttcctgtgctcaggcttcccttgtgtcc
ctccagattcgaatgccagatttcaagtggctaaaactatcagaaactaatgccagacgt
gctctagttgagcaatcccgttttcaggaggcacttattgttgctgaggcttatggtctc
aaccaacctagtgaatgggccttggtactttggaatcaaatgctcaaacctgaactaaca
gaacagtttgttgctgaatttgttgctgtgctccctctccacccaatgatgcttgcagaa
cttgcacgattttatagggctgaggttgcggcgagaggggaccaatcacaattttcagtt
tggctaacaggcggaggcctgccagcagagtgggctaaatatcttgaaagatcattcaga
tgtcttctgaagaggactagggatttgaagctccgtttgcaacttgctacaattgcaact
ggttttatcgacataattgacgttctgacaaaggcattagatagggtccctgagaacgcc
gggccactagtgctgaggaaggggcacggtggagcttacttgccactaatgtaa
DBGET
integrated database retrieval system
