Daucus carota (carrot): 108222707
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Entry
108222707 CDS
T05350
Name
(RefSeq) protein CHROMATIN REMODELING 8 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
108222707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dcr03036
]
108222707
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108222707
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
108222707
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
108222707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HDA2-3
ResIII
AAA_30
Motif
Other DBs
NCBI-GeneID:
108222707
NCBI-ProteinID:
XP_017252080
UniProt:
A0AAF0X5H0
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All DBs
Position
5:complement(35895172..35902461)
Genome browser
AA seq
1206 aa
AA seq
DB search
MKREEEDNAFLSSLGVTSADPEDIERVVLQQGRSNVGGNSESGRTVDRKAIDTAEDTEPS
SSHRHVEIYNKLRAVNIEIDAVASTVEQVHSVKSEDCDPDEATGKQHSSFNPWSSDPIQQ
ALASDRLRSLKKTKTQLENELIKYKGKSAEGSASEEFIQDVVKEEPKRKRKDPKLNESQK
KRRKAVSFEDDGDFDAVLNAASAGFVETERDELVRKGILTPFHMLKGFERRIQERGTSGE
RDLPEDVDKTDDFASSSIDRAARSISQAAEARPTTKLLDPESLPRLDAPTRPFQRLRAPP
RIPRSLRNMPETDKDFRRKKRPLAGKKWRKLTSQEVSNLEISEDLRTSSNEEDNQESVDD
EPSFVTLEGGLDIPETIFTKLFDYQKVGVQWLWELHCQKVGGIIGDEMGLGKTIQVLAFL
GALHFSNMYKPSIVVCPVTLLRQWKREAQKWYPAFHVEILHDSAHDITAKKKQAESDESD
YESESDIRVNSSRRNDKKWDTLIKRVLKSDSGLLITTYEQLRLLGGKLLDIGWGYAVLDE
GHRIRNPNADVTLVCKQLRTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPIFEAEF
AVPISVGGYANASPLQVSTAYRCAVVLRDIILPYLLRRMKADVNAQLTKKTEHVLFCSLT
SEQRSVYRAFLASSEVEQIFNGNRNSLYGIDVMRKICNHPDLLEREHSYGDPDYGNPERS
GKMKVVAEVLKVWKEQGHRVLLFAQTQQMLDILESFMISCSYTYRRMDGVTPVKQRMTLI
DEFNNSDEVFIFILTTRVGGLGTNLTGANRVIIFDPDWNPSTDMQARERAWRIGQTKDVT
VFRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKSRDMKDLFVLTDDGEHGSTET
SSIFSQLAEDVNVVGNHKDSEHDAKLNKPTAFSASIASTENGHDSTIKSSKKGKERAENS
GKETDVESNILQSLFDAHGIHSAVNHDLIMNANDEEKLKLEEQASRVAQRAAEALRQSRV
IRSRESIAVPTWTGRSGAAGAPSSARQKFGSTVNTKLIGSSRPSEGLPNSEGRNLSLAAG
AATGKALTSSELLAKIRGNQERAIGDGIEQQFGMASSSTGSSANDRKMKSSNLSGVQPEV
LIRQICTFLLQRGGRAVSASIVQHFKDRIPSKDLPLFKNLLKEIATLEKNPSGSSWVLKP
EYQEEQ
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgagaagaggaagataatgcattcttgagtagtttgggtgtcacatctgcagac
cctgaagatatcgagcgtgttgtactacaacagggaagaagcaatgtcgggggaaacagt
gaatctgggaggactgtggatcgcaaagctattgatacagcagaagacaccgaaccgtca
tcatctcacagacatgttgaaatctataataagttgagggcggtaaatattgaaatagat
gctgtcgcatcaactgttgaacaagtacactctgtaaaaagtgaagattgtgatcctgat
gaagctactggaaagcaacatagttcttttaatccttggtccagtgatccaattcagcaa
gctctagcttctgataggttaagaagcctcaagaagacaaagactcagcttgagaatgaa
ctcatcaaatataagggcaaatctgctgaaggtagtgcttctgaggagtttatacaagat
gttgttaaggaggagcctaagcggaagagaaaagatccaaaattaaatgagagccagaag
aagcgtaggaaagcagtttcatttgaagatgatggtgactttgatgcagttttaaatgca
gcatctgcaggatttgttgaaactgaaagggatgaattagttcgtaaaggaattttaacc
ccctttcacatgcttaagggttttgaacgtcgtattcaagaaagagggacatctggtgaa
agagacttacctgaggacgtagacaaaacagatgattttgcttcttctagcatagacaga
gctgcccgatcaatatcacaagctgcagaagctcgcccaacaaccaagctattagatccg
gaatctctgcctagacttgatgccccaactcgtcctttccaaaggcttagagcaccccca
agaatacctcggtcacttagaaatatgcctgaaactgacaaggactttagaagaaagaaa
aggcctttagctggaaaaaaatggagaaaattaacttctcaagaagtttcaaatctggaa
ataagtgaagatttaagaacctctagtaatgaagaagataaccaagagtccgtagacgat
gaaccctcttttgtgacgcttgaaggtggtctagatattccagagaccattttcaccaaa
ctttttgactatcaaaaggttggggtgcagtggctttgggaacttcattgccagaaagta
ggtggaattattggagatgagatggggcttggtaaaaccatccaagtcttagcttttctt
ggagcattgcattttagtaatatgtacaagccaagcatagttgtttgtcccgtaacactc
ttgcgtcaatggaagcgtgaagcccaaaaatggtacccagcatttcatgttgaaatatta
catgattctgctcatgacattactgcaaagaagaagcaggccgaatctgatgaaagtgat
tatgaaagcgagtctgacatcagggtaaattcatccaggcgaaatgacaaaaaatgggat
accttgattaaacgtgtgttaaaatcagattctggattgttaattaccacttacgagcag
ctccggttgctaggggggaaacttctcgatattggctggggttatgcagttctggatgaa
ggccatagaatccggaatccaaatgctgatgtcactttagtttgcaagcagctacgtact
gttcatcgtataataatgacgggtgctccaattcagaataagttgtctgaactatggtct
ctttttgactttgttttccctggaaaattgggtgtgctacccatatttgaagctgaattt
gcagttcccatttctgttggtggttatgccaatgcctcacctttgcaagtatcaactgct
tatagatgcgctgttgttttacgtgatattattttgccttacctcctccggcgtatgaag
gctgatgtaaatgctcagctaacgaagaaaactgaacatgtcctcttctgtagcctcact
tcagagcagcggtccgtgtatagagcattccttgctagttctgaggttgagcagatcttt
aacgggaacaggaattctctttatggaattgatgtgatgcgaaagatctgcaaccacccc
gatctgcttgagagggaacattcctacggggaccctgactatggaaatcctgagcgcagt
gggaaaatgaaagttgttgctgaagttctcaaagtttggaaggagcaaggtcatcgtgtt
cttctatttgcacaaactcaacaaatgcttgacattttggaaagttttatgattagttgt
tcctatacataccgtagaatggatggtgtcactcctgttaaacagagaatgacattaata
gatgaatttaacaattcagatgaggtcttcatcttcattttaacaactagggttggtggt
ttgggaacaaatcttactggtgcaaacagggtgatcatatttgaccctgattggaatcct
tcaactgatatgcaggcgagggagcgtgcttggcgtatcggtcagacaaaagatgtcaca
gttttcagattgattacccgtggaacaattgaagagaaagtgtatcaccggcagatttac
aagcatttcctcactaacaaaatattaaagaatccgcagcagaaaaggttctttaaatcc
cgtgacatgaaggatctttttgtacttactgatgatggagagcatggctctactgagacc
tctagcattttcagccagctagctgaagatgtaaatgtggtgggtaatcataaagacagc
gaacatgatgctaaattaaataaaccaacagcatttagtgcaagcattgctagtaccgag
aatggacatgactcgacaatcaaatcgtccaagaagggaaaagagagagctgaaaatagt
ggcaaggaaactgatgtggaatcaaatatattacaatctctctttgatgctcatgggatt
catagtgcggtgaaccatgatctgatcatgaatgctaacgatgaagagaagctgaaacta
gaggaacaagcttctcgagttgcacagagagcagctgaagcattacgccagtcaagggtg
attagaagtcgagagagtatagctgttcctacctggacaggaagatcaggggctgctggt
gcaccatcatctgctcgtcaaaagtttggctccactgtaaacactaagttaattggtagt
tctaggccttctgaaggattgcctaacagcgaaggaagaaatttgagcttggccgctgga
gcagctactggtaaagcattaacttcttcggaattactagcgaagataagaggaaatcaa
gaaagggcaatcggcgatgggattgaacagcaatttggcatggcctcaagctctaccggg
agttctgcaaatgatagaaaaatgaagtcatcaaatttgtctggggtacagccagaagtg
ttaatacgtcagatctgcacatttttactacaaagaggtgggagagctgtttcagcaagt
atagtacagcatttcaaggacaggattccctccaaagaccttcctttgttcaagaatctc
ttgaaggaaatcgccactttggagaaaaatcctagcggatcttcttgggttttgaagccc
gagtatcaagaggaacaatag
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