KEGG   Daucus carota (carrot): 108222723
Entry
108222723         CDS       T05350                                 
Name
(RefSeq) protein REDUCED CHLOROPLAST COVERAGE 3
  KO
K03255  protein TIF31
Organism
dcr  Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03012 Translation factors [BR:dcr03012]
    108222723
Translation factors [BR:dcr03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    108222723
SSDB
Motif
Pfam: TPR_12 eIF3_p135 TPR_10 TPR_NPHP3 CLU_N TPR_2 TPR_8 TPR_9 TPR_MalT CLU DUF5969 DUF7825 TPR_1 PAM2
Other DBs
NCBI-GeneID: 108222723
NCBI-ProteinID: XP_017252108
UniProt: A0AAF0X2W5
LinkDB
Position
5:1872064..1883802
AA seq 1735 aa
MAPRSGRGKGNRNKAEKKKKEEKVVPTLVDIIVITPYETQVILKGISTDKILDVKKLLAV
NVETCHLTNYSLSHEVKGQKLSEKVDVTSLKPCVLKIVEEKYTEEQHAVAHVRRLLDIVA
CTTRYDKPKNGKPNSPTAHAVGSGKARTRDPVPNADPPPENGEPTAAAAAIESLDMAAIH
PIPKLSDFYDFFAFSHLSPPIINLKRVEQKDEQKKPDGDYFEMQIKICNGKLIHVVASVN
GFYTLGKQFLQSHSLVDLLQRLSQAFANAYDCLMKAFVEHNKFGNLPYGFRANTWLFPPS
LSDSASNYVPLPMEDENWGGNGGGQGRHGEYDLKPWATDFAILRSLPCKTEEERVVRDRK
AFLLHSQFVDCSILKAVSAIRQATNSSMNATERLKSSPGSILHESRIGDMSITVRRDAAD
ASTKIESNLFGRELTSTSAKEAAQMSLLKGVTADESVVVNDSLSLGTVVVRQCGYTATVK
VVGDVKKDRYNSQNIDIDDQLDGGANALNINSLRTLLPKSSTIEPSGGSHSPHTDVSDIE
TSRCLVQKVIKDSLSKLEEEPELTDRLIRWELGSCWIQHLQKKDTTTDDMSKSPTNDKAE
AVVRGLGKEFKLLKRREKTAGSVDDNDENDYRSSNLDVENSIRDVSNSEYESEAELKKFV
SEEAFLHLKETGTGLHLKSVDELIKMAHTHYDEVALPKLVTDFGSLELSPVDGRTLTDFM
HLRGLKMRSLGRVVELADKLPHIQSLCVHEMVTRAFKHVLKAVIASVENVADLSAQIASS
LNFLLGNCKTEGNNHNSSEDHKIKLQWLRTFLATRFGYTKKDEFQQLRKISILRGLCHKV
GLELVPRDYDMESQNPFNSSDIISMVPVCKHVGCSSADGRTLLESSKIALDKGKLEEAVN
CGTKALAKMIAVCGPYHRTTASAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP
DTMKSYGDLSVFYYRLQHIELALKYVNRALFLLYFTCGLSHPNTAATYINVAMMEEGMGN
VHVALRYLHEALKCNQKLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAK
LGAEDLRAQDAAAWLEYFESKALEQQEAARNGTPKPDASIASKGHLSVSDLLDFISPDQD
SKGDAHRKRRAKVWPVGDKSQQLQHDERSNDSTVPDGIETTGVTAESSKAEDRPGIVISQ
AESSTVEDRPAVIVSEEPKDMDFRKNEPIVTEQAVQEASSDEGWQEANSKVRTGNGASRK
YGRGRPDLAKLKIGKSEYFNPRDSSYRREAMLQGKKMTPRTNVTEPSKQRQIKILSSSAG
EDMPKIPATTSVSKVPATLVSKVSPVSSPLTSMASKSLSYKEVAVAPPGTVLKPLLEKVE
DLNEVKTDIQICLSPSEKVTENGSKIPLEEAIPDDEAVKDVHISEDPESEPESEESASAQ
EDSKLAGSGDQDSSVETNGSKLSAAAEPFSPGAFPLTHPLTSVAVTSVYDVIASQGMLAE
PIGFPPLAARVPCGPRSPLYYRMSHSMRMKHGFLKYQLPPPERSGIGSPGIMNPHAPEFI
PKKAWLTNPVIENSEVPTDSNSIIDANGELVAEAKAGEGVASKSEDVRTKKRSSDAEKAE
FARQILLSFIVKSVQHNPDPVSQPPVTQTKSEFPENSSEAVANDSAIIKILYGNEGKTNL
DSQTGGDEELKTVDITNKQGDEGFVVVTKRRRNRQHFTSGVNGLYNRQSMSASVR
NT seq 5208 nt   +upstreamnt  +downstreamnt
atggccccgaggtccgggaggggaaaagggaatagaaacaaagcggagaagaagaaaaag
gaagagaaagttgtacccactcttgttgacataattgttatcaccccgtatgagacacaa
gtcatactcaagggaatctcaacggacaagatacttgatgtgaagaagctgctagcagtt
aacgttgaaacctgccaccttacaaactattctctgtctcatgaggtgaaagggcagaaa
ctgagtgagaaggtggatgtgacttcattgaagccatgcgtgctgaagatagttgaagag
aagtacacggaggaacagcatgccgtagcccacgtgcggagactactcgacattgtcgcg
tgcacgacacgttacgacaagcccaagaacggaaagcccaacagccccacagcccatgca
gtcgggtccggaaaagcccgtacccgtgacccggttccaaatgcggatccaccgccggag
aatggggaaccaacggcggcggcggcggcaattgagagcttagacatggcggcgattcac
ccgataccgaaactttcggatttttacgattttttcgcattctctcacctctctcctcct
ataatcaatttgaagagagtggagcagaaagatgaacagaagaaaccagatggggattac
tttgaaatgcagattaagatatgcaacggaaagcttatacatgtggttgcatcagtaaac
gggttctacactttaggaaaacagtttttgcagagccactcactggtggatctcctgcaa
cggctcagccaagcttttgctaatgcatatgattgcttgatgaaagctttcgtggaacac
aataagtttgggaatcttccctatggttttcgtgccaatacatggctatttcctccatcc
cttagcgattctgcatcaaattatgtgcctctgccaatggaagatgaaaattggggtgga
aatggaggtggccagggaagacatggtgaatatgatcttaaaccatgggctacagatttt
gccatattgaggagtctgccttgcaaaaccgaggaggagagggtggttagagaccgaaag
gctttcttgcttcatagtcagtttgtcgattgctcaatattgaaagctgtctcagccata
cgccaagcaacaaattccagtatgaatgcaacagaaagattaaagtcatcacctggctca
atcttgcatgaaagtcgtattggggacatgtctattacagtgagacgagatgctgcagat
gccagcacaaaaatagaaagcaacttgtttggcagggaattaactagtacatctgcaaag
gaagcggctcaaatgagtttactgaaaggggtaactgcagatgagagtgtagttgtaaat
gattctctgtcattgggtactgttgttgtacggcaatgtggatatacagctactgtaaag
gttgttggtgatgttaagaaggatagatacaactctcagaacattgacattgacgatcaa
cttgatgggggagcaaatgctctcaatataaacagcttaagaactcttctccccaagtca
agcactattgagccatctggagggagccactcacctcatactgatgtatctgatattgaa
acttcaagatgtcttgttcaaaaagtaattaaggacagcctaagcaaattggaggaagaa
ccagagctaactgataggctgatcaggtgggaacttggttcttgttggattcaacattta
caaaagaaggatacaactacagatgatatgtctaaaagccccacgaatgataaggctgaa
gcagtagtaagaggacttggaaaggaatttaaactgctgaaaaggagggaaaagacggca
ggaagtgtagatgataacgatgaaaatgactatagaagcagcaatttggatgtggaaaac
agcatcagagatgtgagcaacagtgagtatgaaagtgaggcagagttgaagaaatttgtc
tctgaagaagccttcttgcatttgaaagaaactgggacaggtcttcatttaaagtcggtg
gatgagctcatcaagatggcgcacacacattatgatgaagttgctttgccgaagctggta
acagactttggatcactcgaactctctccagttgatggacgcacactaactgattttatg
catttaagaggactgaaaatgcgctctttgggtcgtgtggttgaacttgctgataagctc
cctcatatacagtccttgtgtgttcatgaaatggttactcgagctttcaagcatgttctc
aaagctgtgattgcttctgttgaaaatgttgctgatttgtcagcacaaatagcctcttcc
ctgaattttttgcttgggaattgcaagacagaaggcaacaatcataattcaagtgaggat
cataaaatcaaattacagtggttaaggacatttttggctacaagatttggttacacaaaa
aaagatgaatttcagcagttgcggaaaatttcgattctccgtggactttgtcacaaggtt
ggattagagttggtaccaagagattatgatatggaaagtcaaaacccctttaatagttcc
gacattattagcatggttccagtttgcaagcatgttgggtgttcttctgctgatggacgg
actttattggagtcttcaaaaattgccttggataaggggaagctggaagaagcagttaat
tgtggaaccaaggcattggcgaagatgatagctgtttgtggtccctatcatagaacaact
gcaagtgcgtatagtctcttagctgttgttctttaccacactggagattttaatcaggca
acaatttaccaacaaaaggctttagatattaatgagagagaacttggcctggaccatcca
gatacaatgaagagctatggagatctttcagttttctattaccgtctccaacacatagaa
ctggctctgaaatatgtcaaccgtgctcttttccttctctattttacatgtggactgtca
cacccaaacacagctgcaacttatataaatgtggctatgatggaagaaggcatggggaat
gttcacgtagctctcagatacctgcatgaagctcttaaatgcaaccagaaattgttagga
gcagatcatatacagactgctgctagctatcatgccatcgcaatagctctttcgttgatg
gaagcatattccttaagtgtgcaacatgagcaaacaactttacaaattcttcaagccaag
ctgggagcagaggatctccgtgcccaggatgctgctgcatggctagagtattttgaatca
aaagctttagaacagcaagaagctgcacgtaatggaacaccaaagccagacgcatcaatt
gccagcaaagggcaccttagtgtatcagatctccttgatttcataagtccagatcaagat
tcaaagggagatgcacacagaaaacgacgagcaaaggtctggccagtcggtgataaatcc
caacaactgcagcatgatgaaagaagcaatgactccactgttcctgatgggatagaaact
acaggggtgactgcagaatccagtaaagctgaagataggccaggcattgttatttcccaa
gcagaatccagtacagtggaagataggccagccgtgattgtttccgaagaacccaaggac
atggacttcaggaaaaatgaacctatagtcacagaacaagctgttcaggaagctagctcg
gatgaaggttggcaagaagccaattcaaaagttcgtacaggaaatggtgctagtcggaaa
tacggccgggggcgtcctgatcttgctaagctcaaaataggcaagtctgagtacttcaat
cctagagatagtagctatcgaagggaagccatgttacaggggaaaaagatgacaccaagg
acaaatgtaactgaaccatctaagcagaggcagataaagattctcagctctagtgctgga
gaggatatgcctaaaattccagcaacaacttcggtttcaaaagttccagcgactctggtt
tcaaaagtatcaccagtgtcttccccgctcacttctatggcctcaaaatctctatcatac
aaagaagttgcagtggcacctccaggtacggttcttaagcctttattggagaaagttgaa
gatttaaacgaggtaaaaactgatattcagatatgccttagtccctccgaaaaagtaaca
gagaatggaagtaagatccccttagaagaagcaataccagatgatgaagctgtcaaagat
gttcatattagtgaagatccagaaagtgaacccgagtcggaagaatctgcctctgcccaa
gaagattcaaagctagcaggttcaggcgatcaggacagctctgtagaaacgaatgggagc
aagctttcagctgccgctgaaccatttagtccaggagccttccccttgacccacccatta
acttcagttgctgttacaagtgtttatgatgtaatagccagtcaaggcatgcttgcagaa
ccaattggattcccgccacttgctgctagggttccttgtggacctagatcacctctatat
tacagaatgagccattctatgcgtatgaaacatgggtttctgaaatatcaattaccccca
ccagaaagaagtggaattggttctccagggatcatgaatccacatgcacctgaatttatt
ccaaagaaagcttggctaacaaatccagtgatcgaaaattcagaagttccaacagattca
aattcaataatcgatgcaaatggtgaattggttgcagaagcaaaggcaggggaaggagtg
gctagtaaaagtgaagatgtcagaacgaagaaacgcagctcggatgctgaaaaagcagag
ttcgcaaggcagatactactgagctttatagtgaaatcggttcaacacaatcctgatcct
gtaagtcaacctccagtaactcaaacgaaatctgagttccctgaaaattcatcagaagca
gttgcaaatgatagtgcaattataaaaattctgtacgggaatgaagggaaaacgaactta
gattcccagaccggaggagatgaagagctaaaaacggttgacattacaaacaaacaagga
gatgaaggatttgtagttgttacaaaacgaaggagaaacaggcaacatttcacaagtggg
gtaaatgggttgtacaatcgacaatctatgtctgcttcggtgcgttga

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