Daucus carota (carrot): 108222754
Help
Entry
108222754 CDS
T05350
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03020
RNA polymerase
dcr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108222754
09124 Replication and repair
03420 Nucleotide excision repair
108222754
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcr03021
]
108222754
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108222754
Enzymes [BR:
dcr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108222754
Transcription machinery [BR:
dcr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
108222754
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
108222754
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
RecQ-1-like_HTH
Motif
Other DBs
NCBI-GeneID:
108222754
NCBI-ProteinID:
XP_017252141
LinkDB
All DBs
Position
5:7186667..7195719
Genome browser
AA seq
1843 aa
AA seq
DB search
MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVHIEHGETTERGKPKPSGLSDPRLGTI
DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDYK
FKQAQKIRNPKNRLKKILDSCKSKTKCEGGDEIESQSQDTDEPLKKSRGGCGAQQPKITI
EGMKMIAEYKIQKKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCMLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS
EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN
LMRQSAWHADGETGHITPGDTQVRIEKGEVITGTLCKKTLGASTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISTAKNAVKELIRSAQDKDL
EPEPGRTMMESFENKVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKNEFDKVFRYEIDDGNWNPSYMLPDHVEDLKTIREFRNVFDAEVQKLEADRFQ
LGTEITTTGDNTWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP
GDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
PNVSSSKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIDEDVDFVKSYYEMPDEEI
DPDKISPWLLRVQLNREMMIDKKLSMADIAEKINLEFDDDLTCIFNDDNADKLILRIRIM
NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQQKTNRFDENNGFVT
EPEWMLDTEGVNLLAVICHEEVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY
LRGVTENIMLGQLAPIGTGDCSLYLNEKMLKQAIDIQLPSYMDGLDFGMTPARSPISGTP
YHDGMMSPNYMLSPNLRLSPITDAQFSPYVGGMGFSPASSPSYSPSSPGYSPSSPGYSPA
SPGYSPASPGYSPASPGYSPSSPTYSPSSPGYSPSSPTYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYNPSSAKYS
PSLAYSPSSPRLSPSSPYSPTSPSYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGASPDY
SPSSPQYSPSAGYSPSAPGYSPSSTSQFSPQASNKKSNKENGK
NT seq
5532 nt
NT seq
+upstream
nt +downstream
nt
atggatatgcgatttccgttctcgccggctgaggtggccaaagttcgtatggtccagttc
ggaatactcagtcccgacgaaattagacaaatgtcagttgtgcatatcgagcacggtgaa
acgactgagagagggaagccgaagccgagtggtttaagtgacccgaggcttgggactatt
gaccggaaaatgaagtgcgagacttgtatggctaatatggctgagtgtccgggtcatttc
ggtcacttggagcttgccaaaccgatgtttcacattggttttctcaagactgtgctcagt
attatgcggtgtgtttgctttaattgctccaaaatccttgctgatgaggaggattataaa
tttaagcaagctcagaaaatcaggaatccaaaaaatagacttaaaaagattttagattcc
tgcaagagcaaaactaagtgtgagggtggtgatgaaatagagtcccaaagccaggatact
gatgaaccacttaagaagagtaggggaggttgtggtgctcaacagccaaagattactatt
gaaggtatgaaaatgatagctgaatacaagatccagaaaaagaaaaatgacgatccggaa
cagctacctgagcctgttgaaaggaaacaacagctttccgccgagagggtgctaaatgtg
cttaagcggataagtgatgaagattgcatgttactgggcttaaatccgaagtatgcacgc
ccggattggatgatcctgcaagttcttccaatccctcctcctccggtcagaccttctgta
atgatggatacttctgctcggagtgaggatgatttaacacatcagctggcaatgattatc
agacacaatgagaatctaaggaagcaggagagaaatggagctcctgctcacataatttct
gaatttgctcagttgttgcagtttcatgttgcaacatattttgacaatgagcttcctggg
cagccgagggctacccagaggtcagggcgtccaattaaatcaatttgcagcaggcttaaa
gctaaggagggtcgtattagaggaaatttaatggggaagcgtgtcgatttctctgcacga
acagttatcacacctgatccgactatcaatatcgatcaacttggagtgccatggagtata
gctttaaatttaacttacccagagactgtaaccccttataacattgaaaggctgaaggaa
cttgttgaatatggtcctcatccccctcctgggaaaactggtgccaaatacattattaga
gaagacggtcagaggcttgatctccgctacttgaagaaaagtagtgatcatcatttagaa
cttggatacaaggttgagcgacacttgaatgatggagattttgttttgtttaatcggcaa
ccaagtcttcacaagatgtctattatggggcatcgaattaaaatcatgccatattcaacc
ttccggctgaatctatcggtcacttcaccgtataatgctgattttgatggagatgagatg
aatatgcatgttccacagtcatttgaaactagggcagaagttttggagttgatgatggta
cccaaatgcatcgtgtctccacaggcaaatcgaccagttatgggtattgtgcaggataca
cttctagggtgccgtaagataaccaagagagatacctttattgagaaggacgtctttatg
aacattcttatgtggtgggaggattttgatggcaaagtacccgcgcctgccattttgaag
cctagaccgctttggacaggaaagcaagtgtttaatcttatcatccccaagcagataaat
cttatgaggcaatcagcgtggcatgctgatggtgaaactggacatataacaccaggagat
actcaggttcgaatagagaagggggaagtcattactggtacactttgcaagaagacccta
ggagcttcaacaggaagtcttatccatgtcatctgggaggaagttggcccagatgctgcg
cgcaaattcttaggacacacacaatggcttgtaaactactggcttctgcagcagggtttc
agcattggtataggagataccatagcagacgcagcaacaatggaaaaaattaatgaaact
atttctactgctaagaatgcagtcaaagaattaattagatcagcacaagataaggattta
gaaccggagcctggtcgcactatgatggaatcatttgagaacaaagttaatcaggtcttg
aacaaggctcgagatgacgctggaagcagtgctgaaaaaagtttatcagagagtaacaat
ttgaaggcaatggttacagctgggtcaaaaggaagttttattaatatatcacaaatgact
gcttgtgtgggacagcagaatgttgaggggaagcgaattccatacggattcattgatcga
acacttcctcatttcaccaaggatgattatggacctgaaagtcgtggttttgtggagaac
tcttatctacgaggactaaccccacaagaattcttttttcatgctatgggaggtcgtgaa
ggtctgatagacacagcagtcaagacatctgagacaggttatatccaaaggaggctagta
aaagctatggaagatattatggtcaagtatgatggtactgtcaggaattcactaggggac
gtgatccaatttctttatggggaggatggtatggatgctgtttggatcgagtctcagaaa
ctggattcccttaaaatgaaaaagaatgaatttgacaaggtttttaggtatgagattgat
gatggtaactggaatccaagttacatgcttccagaccacgtagaggatttaaaaacaatc
cgagagttccgtaatgtgtttgatgccgaagtccagaagctcgaggcagacagattccag
cttggtacagagatcaccacaactggtgataacacctggcctatgcctgtgaatcttaag
aggcttatttggaatgcacagaaaacgttcaaggttgatttgagaagaccttctgatatg
catccaatggagattgtcgaagctgttgataagcttcaggaaagactgaaggttgtccct
ggtgatgatttgatgagcatggaagctcagaaaaatgcaaccctcttttttaatattctt
cttcgcagtacatttgcaagtaagagagtattaaaagagtacagattaactcgggaggca
tttgattgggtcattggtgaaatagagtcacgttttctgcagtcgcttgtagcaccagga
gaaatgattggctgtgttgctgctcagtctattggtgagcctgctactcaaatgactctc
aacacttttcactatgctggtgtgagtgcaaagaatgtgacacttggtgttccaaggttg
cgggaaattataaatgttgccaaaaagattaaaactccatcattatctgtctacttgaag
cctaatgtcagctcttcaaaagaaaaggctaagaatgtacagtgtgctttggagtatact
actttgcgaagtgtgacccaagctactgaagtatggtatgatccagatcccatgagcacc
attatagacgaggatgttgattttgtcaagtcgtattatgaaatgccagatgaagaaatt
gatccagataaaatttccccttggctactccgtgtgcagctgaatcgggaaatgatgatt
gacaagaagttgagcatggcggatatcgctgagaaaatcaatcttgagtttgatgatgat
ctaacctgcatatttaatgatgataatgctgacaaattgattcttcgaatacgcataatg
aatgacgaggctcctaaaggtgaattgcaagatgaatctgcggaagatgatgtttttctc
aagaaaatcgagagcaatatgctcacagaaatggccctacgtggcattcctgacatcaac
aaggttttcatcaaacagcagaaaacaaacagatttgatgaaaataatggatttgtgact
gagcctgagtggatgctagacactgaaggagttaatctcttggctgttatttgtcatgaa
gaggttgatgcacgaaggacgactagcaatcacttgattgaagtgattgaagttctgggg
attgaagcagttcgcaggtccttactggatgagttgcgagtggttatatcttttgatgga
tcttatgtaaattacaggcacttggctatcctctgcgataccatgacataccgtggtcac
ctgatggccatcactcgtcatggaattaataggaatgacacaggtccaatgatgagatgt
tcatttgaggaaacagttgacattctccttgatgctgcagtttatgcagaaacagattac
ctgagaggtgttactgaaaatatcatgttgggtcaactggcaccaattggcactggagac
tgttctttgtatttaaatgagaagatgttgaaacaagctattgacattcagcttcctagt
tacatggacggtctggactttggcatgactccagcccggtcgccaatctcgggcacccca
tatcatgatggaatgatgtcaccaaactacatgctaagcccaaaccttcggctgtcaccc
attactgatgcacaattttctccctatgttggtggcatgggattttctcctgcatcttct
ccaagttatagcccctcttcacctgggtacagcccctcctctcctgggtacagccctgcc
tctcctgggtacagccccgcctctcctgggtatagccctgcttcacctggttatagcccc
agctcaccaacatatagtccaagctctccaggatatagtcctagtagccctacatattca
ccgacaagtccatcctactcccctacctcccccagctacagccccacctcccccagctac
agccccacctccccaagctacagcccgacctccccaagctacagccccacctcacctgcc
tacagccccacctcacctgcttacagccccacctctccgtcctacagccccacctctcca
tcctacagcccgacctctccgtcctacagcccgagctccccgtcctacagcccaacctcc
ccatcctacagtccaacctccccatcatacagcccaacctcaccttcatacagtccaact
tctccatcatatagtcctacttctcctgcatacagtcccacatcgccgagctacagtccc
acatctccaagctatagtcctacatctccaagctacaacccttcatctgcaaagtacagc
ccctccctggcatattccccgagcagtccaagactatcaccatccagcccgtacagtccg
acatcccccagttacagccctacttcaccctcttattcccctacatctccatcctattcc
ccttcaagtccaacatacagccccagcagtccctataattctggtgctagcccggattat
agtccaagttcaccacagtacagtccaagtgctgggtactcaccgagtgcacctggatat
tcaccatcctcgaccagccagttttctcctcaggctagcaacaagaagagcaacaaggaa
aatgggaagtga
DBGET
integrated database retrieval system
