Daucus carota (carrot): 108222761
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Entry
108222761 CDS
T05350
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108222761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108222761
03012 Translation factors [BR:
dcr03012
]
108222761
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108222761
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108222761
Translation factors [BR:
dcr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108222761
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
HA2_C
R3H
OB_NTP_bind
HA2_N
Ank_2
AAA_19
Ank_5
nSTAND3
AAA_22
ATPase
HEPN_DZIP3
PhoH
AAA_16
Rad17
AAA_7
AAA_11
AAA_23
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
108222761
NCBI-ProteinID:
XP_017252148
LinkDB
All DBs
Position
5:9205244..9224599
Genome browser
AA seq
1586 aa
AA seq
DB search
MTNNPIGGATSEAAAENVEGDVVVLGANGDEEEMTDVVLNSNRSGEEVEVQLIGKSGGEE
EIEPKATEVVINREVVGGVINRKMEDEEKEKCGVGSNGMRSEVEEKVEVQVIGKSGGEEE
IEPKAMEVVINREFVGGVSDRKTEDKEEVKCEVGSNGMRSEVEEKVEVQVIGKSGGEEEI
DPKAKTKEKEEKCEAGLNGVSSEEKLGDKKGEVEGSDIRGLVEGQGGGGGAKVTKAEKRK
RRRMARLAEELTNVKKRRISGNYERGINGEVNDKMDVDAVEDMDLGSIKVSARQRLVRRS
LRIASQIKLGGKIDYTQPDGNEGDSTNVEKQVGEASGKDDLQEDREKEIKGELKNSKQPK
QINKGGKKCRPAMQRRQERLAKQQAARDSRAKLISVLRRFDASDDQEYRFDVSLTRAERS
EVHLLCSKMGLASRSSGSGRGRRITVYKRRVRAKKIRENNITRFTLSEEAKDVSLNLFTR
YPPYDCGSGDKMVGKFVEKTSRRQGPDPFFSRPLMSKFDIKRKVELLTNKLESDPKLKKI
TEKRTKLPIASFRDAITSAIDSHQVVLISGETGCGKTTQVPQYVLDHVWSKSKTCKIVCT
QPRRISAVSVAGRIASERGESIGNSVGYKIKMESEGGRNSSIIFCTTGVLLRLLVNMGSN
NLGKESSKTRDAITGPDGITHIIVDEVHERDHFSDLLLAIVRDLLPSKPNIRLVLMSATI
DAERFSQYFGGCPVIRVPGFTYPVKTFYLEDILSILKSNENNHLESASRLVTSENILLSE
EYRAVIDDTITLAWSNDEYEPLLDLVTAEVGFNILDFQHSTTGVTPLMVFAKKGRVGELC
MTLSLGADYSLQDNDGATALEWAERENQKEAAEILKKHMEKQVANTEQKECLLDQYLANV
NSELVDFVLIEKLLKKICTDSTDGAILVFLTGWDDIQRTIERLKRNSFFSDASKFLLLAL
HSKVPSIEQKKVFERPPPGCRKIVLSTNIAESSITIDDVVYVINSGRMKEKSYDPSINVS
TLLSSWISKASAKQRAGRAGRCQPGICYHLYSKIKEASFLDFQVPEVRRMPLEELCLQIK
ILDPARKIGEFLEKLLDPPATQSVTNAISILEELGALSPDEELTELGNKLGSFPVHPVLT
KMLLFAILLNCLDPALTLACVSSYRDPFNQPMDPIEKKKAISAKLELASLYGGHGDQLAV
IAAFECWKIAQEKGQGASFCSRYYLSPGIMKMVSRMRKKFLSELYRKRFIPKDGPCCSLN
AHDPGIRNAVLLAGFYPMVGKLPLNKRGQKGIVETAGGVKVRLTSSSSNYMLASDGSEPL
IIFDEIIRGDAGLLVKNCSVIGPLPLLLLAKEIMVAPCEEDDKNKGGTAPEFSGKDTEDD
NEVHKHKDSPVGQTIMSSPSNIVKVVVDRWLTFESTALDVAQICCLRERFSSATLFKIRN
SFGTQSKIADDSIQSVARILSYDGLSGIPSTLKYKNQQTSETSAPEAEQSELVREKGTSS
QDFCLTSLMQQYHSQNCMRHQGDEEPHHGVKESKSAKPHHGSKTSKSRKLHHGGKASGSM
KRDKSDQPGYCHKQLPPSELTIPKCI
NT seq
4761 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacaatcctattggaggagctacgagtgaggcggcggctgaaaatgtggaagga
gatgttgttgtgcttggagcgaatggcgatgaggaggagatgacggatgttgttttgaat
tcgaatcggagcggagaagaggtggaggttcaattgattgggaagagtggtggagaggaa
gagattgagccgaaagccactgaggttgtgattaatcgcgaggttgttggaggagtgatt
aatcgaaagatggaggatgaggagaaggagaagtgtggggtaggatcgaatgggatgcgg
agtgaggtggaggagaaggtggaggttcaagtgattgggaagagtggcggagaggaagag
attgagccgaaagccatggaggttgtgattaatcgcgagtttgttggaggagtgagtgat
cgaaagacggaggataaggaggaggtcaagtgtgaggtaggatcaaatgggatgcggagt
gaggtggaggagaaggtggaggttcaagtgattgggaagagtggcggagaggaagagatt
gatccaaaggcgaagacgaaggagaaggaggagaagtgtgaggcaggattgaatggggtg
agtagtgaggagaaactaggtgataaaaagggggaggtggaaggtagtgatattaggggt
ttggttgagggccaaggcggtggaggtggtgcgaaggtgacgaaagcagagaagaggaaa
aggaggaggatggcgagattagcggaagaactgacgaatgtcaagaagaggagaattagt
gggaactacgagagaggaattaatggggaagtgaatgataagatggacgtagatgccgtt
gaggatatggatttggggagtatcaaggtgtcggcgaggcagaggcttgttcggaggtca
ttaagaatagctagtcagattaagctggggggcaaaatagattatacacagccggatgga
aatgagggagactcgactaatgttgaaaagcaggttggagaagctagcgggaaggatgac
ttgcaagaagaccgggagaaagaaattaagggggaattaaaaaattcaaaacaaccaaag
cagataaataagggaggaaagaagtgtagaccagctatgcaaaggaggcaggagcgtctg
gcgaaacaacaagctgctcgagattctcgggctaaattaatatctgtacttagacggttc
gatgcttctgatgatcaagagtacagatttgatgtctctttaacaagagcggagcgtagt
gaagtccatttgttgtgcagtaagatgggtctggcgtcgagaagctccgggagtgggcgt
ggacgacgcattactgtttacaagcgtagagtgagggctaaaaagataagggagaataat
atcactcgctttacgttatctgaagaggcaaaagatgtttcactgaacttattcacacgg
tatccaccatatgattgtggatcgggtgacaagatggttgggaaatttgttgaaaaaacg
agcagaagacaaggaccagatcctttttttagcaggcctttaatgagcaagtttgatatt
aaaaggaaggtggaactacttaccaataaactggaaagtgacccgaaattgaaaaagatt
actgaaaagaggactaagcttccaattgcatcttttagggatgccatcacatcagctata
gattctcatcaggtggtgcttatatctggtgaaactggatgcggaaaaaccacacaggtc
ccacaatatgtgttggaccatgtatggagtaaaagtaagacatgtaagatagtctgtact
caaccacggagaatttcagcagtttcagttgctggaaggattgcttcagaaagaggcgaa
agtataggaaacagtgttgggtacaagattaagatggagagtgaaggtgggagaaattca
tctataatattttgcactaccggagtcctcttaaggcttttggttaatatgggaagcaac
aatctaggaaaggaatcttccaaaactagggatgctattactgggcctgacggcataaca
cacattattgtggatgaagttcatgaacgtgatcatttctcagatttactgctagcaatt
gtcagagatctgcttccttcaaagcctaacatacgtcttgtactgatgagtgctacaatt
gatgctgaaaggttttcacaatattttggtggctgcccagtcataagagttcctgggttc
acttatcctgttaaaacattttatctggaggatatactttctatactgaaatccaatgaa
aataatcaccttgaaagtgcttcaagattagttacaagtgagaatatcttgttgtcagag
gaatatagagctgttatagatgacactattactttggcttggtccaatgatgagtatgag
cccctccttgacttggttacagctgaagtagggtttaatatattagattttcagcattca
acaactggagtaactccattaatggtcttcgccaaaaaaggcagagttggagagctttgc
atgaccctttctctgggtgcggattactctttacaagataatgatggagcaacagcactt
gagtgggccgaacgagagaaccagaaggaagctgctgagattttgaagaaacacatggaa
aaacaagttgcgaatactgagcaaaaagagtgtttacttgaccaatatcttgcaaatgtc
aattctgagctagttgattttgtcctcatagaaaaattgttaaagaaaatttgcactgac
tcgactgatggagccatccttgtttttcttactgggtgggatgatatacagagaacaata
gaaagattaaagcgaaactccttcttcagtgatgcttctaagtttttacttttagctctt
cactctaaggtcccttccatagaacaaaagaaagtttttgaaaggccgccacctggttgt
cgcaaaattgttctttcaactaacattgctgagtcgtccatcaccattgatgatgttgtt
tacgttataaacagtggtagaatgaaagagaaaagttacgaccctagtattaatgtatca
acactcctttcttcttggatttcaaaagcgagtgcaaagcagcgagctggacgtgctggg
cgctgtcagccaggtatctgttatcatttatattcgaaaatcaaagaagcctcgtttttg
gattttcaagttcccgaggttaggagaatgcctcttgaagaactttgtctacagatcaag
attcttgatccagcccgcaagattggtgagtttttagaaaagttgttggaccctcctgct
actcagagcgtgacaaatgcgatcagtattcttgaagaacttggggccttgtcacctgat
gaagaactcaccgagcttggaaataagctaggttcttttccagtgcatccagtactgacc
aagatgcttctctttgccattttattgaactgccttgatcctgctttaactctagcttgt
gtctcaagttatagagatccatttaatcaacccatggatcctattgaaaaaaagaaagct
atatccgctaaattggagctagcttcgctgtatggtgggcatggtgatcaactcgcggta
atagctgcatttgaatgctggaagatagcccaggaaaagggtcaaggagcaagtttttgt
tcaaggtactatctgtctcctggcatcatgaaaatggtgtccagaatgcgtaagaaattc
ctgagtgagttatatagaaaaaggtttattcccaaagacggcccttgttgtagccttaat
gcccatgaccctggtatacgcaatgctgtgctccttgctggtttctatccaatggtggga
aagttgcctctgaataaacgtggacagaaaggtattgtggagactgctggtggtgtgaag
gttcgattgacttcttcttcatccaattatatgttagcttctgatggttctgaaccatta
atcatattcgatgagataatccgtggagatgcgggtttgcttgttaagaactgtagtgtc
attggtccgcttccattactgttgctggcaaaagagattatggtggctccttgtgaagag
gatgataaaaacaaagggggtactgcacctgaattttctggcaaggacactgaggatgac
aatgaagtgcacaagcataaagactcccctgtaggacagacaattatgtcaagtcctagt
aatatagtaaaggtagttgttgatcggtggctaacttttgagtcgacagctcttgatgtt
gctcagatatgctgcttaagagagagattctcttcagcaaccttgttcaagattaggaat
tcatttgggactcagtcgaagattgctgatgactccatacagtcagtagctcgtattcta
tcatatgacggactatctggtattccctcaacattaaaatataagaaccagcagacttca
gaaactagtgcacctgaagctgaacagtcggaacttgtacgagagaaaggaacttcgagc
caagacttttgtttaacttctcttatgcagcaataccactcacagaattgcatgcgtcat
caaggagatgaagagcctcatcatggagttaaagaatctaaatccgcgaagcctcatcat
ggaagtaaaacatctaaatccaggaagcttcaccatggaggtaaagcgtcagggtccatg
aaaagggataagtctgaccaacctggttattgtcacaagcaactaccaccttctgaattg
acaataccaaaatgtatttag
DBGET
integrated database retrieval system
