Daucus carota (carrot): 108222784
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Entry
108222784 CDS
T05350
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108222784
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108222784
03009 Ribosome biogenesis [BR:
dcr03009
]
108222784
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108222784
Spliceosome [BR:
dcr03041
]
Complex A
U1 snRNP components
U1 related factors
108222784
Complex B
108222784
Ribosome biogenesis [BR:
dcr03009
]
Eukaryotic type
Pre-60S particles
Helicases
108222784
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
108222784
NCBI-ProteinID:
XP_017252182
UniProt:
A0A164XAJ1
LinkDB
All DBs
Position
5:complement(877243..882578)
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AA seq
499 aa
AA seq
DB search
MSRYDSRSGDPASYRDRRSDSGFGGISTSASKRVDYDGVESPRKLDLDGLTPFEKNFYVE
SSAVAAMSESDVDEYRLMREITVEGQDVPKPVKSFRDVRFPDYVMQEIEKAGFSEPTAIQ
AQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRELAV
QIQQEATKFGASSKIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLETHHTNLRR
VTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYNPYKVV
IGSPDLKANHAIHQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM
DGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLE
DYVHRIGRTGRAGAKGTAYSFFTAANARFAKELITILEEAGQKVSSELAAMGRGAPPPLA
GGGFRDRGRGYGGARPWHK
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgagccgatacgatagccgctccggcgaccccgcttcgtaccgtgaccgccgaagtgat
tcgggatttggaggtattagtacgtctgccagcaagagggttgactatgacggcgtggag
tctccgcggaagttggatttggatggtttgactccgtttgagaaaaacttttatgtcgag
tcttcggcggttgctgctatgtcggaaagtgatgtagatgagtataggcttatgagggaa
atcacggttgaaggtcaggatgtgccgaagcctgttaaatctttccgagatgttcgcttt
ccagattatgtgatgcaagaaattgaaaaggctggcttttctgagcctacagctattcaa
gctcaaggatggccaatggctttaaagggtcgcgatctcattggtattgctgaaacagga
tcgggcaagacactagcttatctactgcctgcaattgtccatgttaatgctcaaccattt
ttagctcctggagatggtccaattgttttggttttggcaccgactcgtgaactggctgtt
cagatacagcaagaagctactaaatttggtgcatcatcgaagattaaaaatacttgcata
tatggtggggtcccgaaaggacctcaagttcgtgatcttcagaaaggtgttgaaatcgtt
attgcaacaccaggacgattgattgatatgttggaaactcatcatacaaatttgcggagg
gtcacataccttgtgttggatgaggctgatcggatgctggatatgggatttgaacctcag
atccgaaaaattgtttcacagatccgcccagatcgtcaaaccctgtactggagtgctaca
tggcctaaggaggttgaacagctggcacgaaaatttctttacaatccatacaaagtggtt
attgggtcaccggatttgaaggctaaccatgcaattcatcagcatgtggacattgtttct
gagagtcagaaatacaataaattagtgaagttgctggaggatataatggatggtagtcgg
attttgatattcatggacactaagaaagggtgcgaccaaattactcggcagcttcggatg
gatggttggcctgctctgtctattcacggagataaaagtcaggcggaaagagactgggtc
ttgtcagaatttaaagctggcaagagccctataatgactgccacagatgttgctgctcgt
ggtttagatgtgaaggatgttaagtatgtaatcaactatgattttcctggatctctcgag
gattatgttcatcggattggtcgtacaggaagagcaggggcaaaaggaacagcatatagt
ttctttacagctgcaaatgccagattcgctaaggaacttattacaattctcgaggaggct
gggcagaaggtcagtagtgagttggcagcaatgggccgtggtgcacctcctcccctagca
ggtgggggatttcgtgatcgtggccgtggctatggtggcgctcgcccatggcataaataa
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