Daucus carota (carrot): 108222824
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Entry
108222824 CDS
T05350
Name
(RefSeq) pre-mRNA-splicing factor RSE1 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108222824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcr03021
]
108222824
03041 Spliceosome [BR:
dcr03041
]
108222824
03036 Chromosome and associated proteins [BR:
dcr03036
]
108222824
Transcription machinery [BR:
dcr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
108222824
Spliceosome [BR:
dcr03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
108222824
Complex B
108222824
Complex C
U2 SnRNP specific factors
108222824
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
108222824
TFTC complex
108222824
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
108222824
NCBI-ProteinID:
XP_017252236
LinkDB
All DBs
Position
5:complement(10813306..10831977)
Genome browser
AA seq
1383 aa
AA seq
DB search
MAVSEEESSSSSSSSSNYKSRSPPHYLAKSVLRGTVVLQVLPGHFRSPSSNDVVFGKETS
IELVIIDDDGVVQSVCEQPLFGIIKDIAVLRWNGNRHQQSLQMQGRDALAIISDSGKLSI
LTFCSEMHRFSPLSQTQLSSPGNSRHQIGRMLTIDSNGYFIAVSAYEFQVAFFKISMSSG
NDIIEKRISYPSETEGDTNTSGLVSSIGGTIWSMCFISNDLRQSYKEHNPVLAILLSRRD
SVVTELLLLEWDIEEDNAHVLSQYSDAGSLAHNITEVPGLYGFAFLFRVGDILLMDLRDA
HNPCCVFRTSLCSLSTAVEELNDAEESCKVHSVEEECIFDVAASALLELGDIHKDKDDDP
MNVDSECGNVNSTSCHVCSWSWEPENVKNPRMIFSVDSGELYMVEIYSDSSGPKVNLSDC
LYKGLPSKALLWVEGGLVAAFVEMGDGMVLQLEEGRLLYKNPIQNIAPILDMSVVDYIDE
KHDQMFACCGMAPEGSLRIIQNGISVEKLLKTPPIYHGVTGTWTIKMKVTDSYHALLVLS
FVEETRVLSVGVSFTDVTDSVGFRPDVCTLACGLVGDGLLVQIYQKAVILCLPTTGVHPE
GIPLSSPVCSSWVADNMNISLGAVGHNVIIVATSNPCLLYILGVRFLSAYRYEIYQLYHV
QLQNELSCISIPEKHSILKPSTPHSSCPDSTFSVPVDIGNTFVIGTHKPSVEVISFIPDK
GIKVVAIGTISLTNTMGTTISGCIPQDIRLVLVDRLYVLSGLRNGMLLRFDWPSTSMMSS
FESTLQKPCSGLSVPPSIAHTNRNSSGPVSSERMKENCPVYLQLIAVRRIGITPAFLIPL
TDSLDADIITLSDRPWLLQTARHSLMYTSISFQPSTHATPVCSAECPNGVMFVAENSLHL
VEMVQSKRLNVQKFPLGGTPRKVLFHNESRLLLVMRNDLSSDSYSSDVCYVDPLSGSILS
SFKLDPGETGKCMELVKVGHEHVLVIGTSLSVGPAMMPSGEAESSSQGRLIVLSLEHRQH
SDADSMTHGSKASSSSQRTSPFRDVTGYVAEQLSNSSMCSSPDENNFDGIKLEETEAWSI
KLCYSTKLSGMVLAVCPYLDRYFLASAGSVFYVCGFPNDNYQRVRRLAVARTRFMIRTLT
AHFTRIAVGDCRDGILFFSYHEDARKLEQLYCDPVQRLVADCMLMDADTAVVSDRKGSVA
VLSRPSHVEDNASPESNLTLNCSFYMGEIAMSISKGSLLYKLPADDAFRGCDVANTVFNV
SCNSILISTLLGSIISFVPLSREEYEILEAVQARLVVHPLTAPILGNDHNEFRSRESAVT
VPRILDGDMLAQFLELTSMQQEAVLSLPLGSPKTVMLSLKSSPPPITANQVVRILERVHY
ALN
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atggctgtatcggaagaagagtcatcttcatcgagcagcagtagcagtaattacaagtcc
cgatcgcctcctcactatctcgctaaatctgttctccgcggcaccgttgtgcttcaggtc
cttcccggccactttcgctccccttcttccaacgacgtcgttttcggcaaggaaacgtca
attgagttggtgattatagatgatgatggtgttgtgcaatctgtttgtgagcagcctttg
tttggtataatcaaagatattgctgttttgaggtggaatggaaatcgtcatcaacaaagt
ctccagatgcaaggaagggatgctttggccattatatctgattccgggaagctctcaatt
cttacattttgcagtgaaatgcataggttttcaccactgtcacaaactcaactctcaagt
cctgggaactcgaggcatcaaattggtaggatgctgaccatagattccaatggttatttt
attgcggttagtgcatatgagtttcaagtggccttcttcaaaatttcaatgtcttccggt
aatgatatcattgaaaagagaatatcttatccttctgaaactgaaggagatacaaatact
agtggactagtttccagtattggtggcacaatttggagcatgtgctttatttcaaatgat
ctacggcaatcatataaggagcacaaccctgtattagccattcttctgagtaggagagat
tcagtagtcacagaattgttattgttagaatgggatattgaggaagataatgcacatgtg
ttgtctcagtattcagatgccggatccctagcccataacataactgaagttccgggatta
tatggatttgcgtttctgtttagggttggtgatatcctcttaatggatttaagagatgct
cataatccctgttgtgtttttagaacgagtttgtgttctttatccactgctgtcgaggag
ctcaatgatgctgaagaatcgtgtaaagtacatagtgttgaagaagaatgtatatttgac
gtggctgcctctgctttactggagcttggtgacatacataaagataaagatgatgacccc
atgaatgtagacagtgaatgtgggaatgtcaattcaacctcctgccatgtgtgttcatgg
agctgggaaccagaaaatgtgaaaaacccaaggatgattttcagcgtagattctggagag
ctatatatggttgagatttattctgattcttctgggccaaaagttaacctatccgattgt
ctctacaaaggccttccatccaaggcccttttgtgggtcgaaggtggattggtcgctgca
tttgtggagatgggtgatggaatggtactgcaactggaagaagggaggttactctacaaa
aatcctatccagaatatagcaccaatattagatatgtcagttgtggattacattgatgag
aaacatgatcaaatgtttgcctgctgtggaatggcaccagaggggtctttaagaatcatt
caaaatggtattagcgtagaaaaattattgaaaactcctcctatttatcatggcgttact
ggtacctggacaattaagatgaaagttactgattcttatcatgctttgctcgtactttca
ttcgttgaagagactagggtgctttctgttggtgtaagctttactgatgttactgactca
gttggtttccgacctgatgtctgcactcttgcatgtggtcttgttggggatggtttgcta
gtgcagatttaccagaaagcagttatactttgtttacctactacaggtgtccaccctgaa
ggtattccattgtcatctccagtttgtagttcctgggtcgctgacaatatgaatattagt
cttggagctgttggacataacgtaattattgtagctacttcaaatccatgcttattatat
attcttggtgtaaggtttttgtcagcttatcgatatgaaatatatcagctgtaccatgtg
caattgcagaatgagttgtcctgcatttccattcctgaaaaacactctatcctaaagcct
tcaactcctcactccagttgcccagacagtaccttttctgttccagttgacattggtaat
acttttgtaattggtactcataagccttcagttgaagtcatatcctttataccagataaa
ggcataaaggttgttgcgataggaaccatttcactaacaaataccatgggcacaaccatc
agtggctgtattccgcaggatataaggcttgtactagttgatcgactctacgttctttca
ggattgaggaacggaatgttacttaggtttgattggccttctacctctatgatgtcctca
ttcgagtcaactcttcagaaaccttgtagtggtttgtctgtgcctccttcaattgcgcac
acaaacagaaactcctcgggccctgtatcatctgagagaatgaaggagaattgtcctgta
tacctgcagttgattgcagtacgccgcataggtattactcctgccttcttgattccgctg
acagattcccttgacgctgatataataactctcagtgataggccttggttgttgcaaact
gcaaggcacagtctcatgtatacatccatatcatttcaaccttcaacacacgccacccct
gtatgctccgctgagtgtcctaatggagttatgtttgttgcagagaacagtctccacttg
gtggagatggttcaaagtaagagacttaatgtacaaaagttccctcttggaggtactccg
aggaaggttctatttcataatgaaagcaggttgttacttgtcatgaggaatgatcttagt
agtgactcttattcatcagacgtatgctatgttgaccctctcagcgggtcaattctgtca
tcattcaaacttgaccctggggaaacgggaaaatgtatggagctggtgaaggttggacac
gaacatgtgttggtaattggaactagtctttctgtgggaccagcaatgatgcccagtggt
gaagctgaaagcagctcacagggacgactgatagtcctcagccttgagcatagacaacat
tctgatgctgattccatgacacatggttcaaaggctagttcatcttctcaaagaacttca
ccttttcgtgacgtcactgggtatgttgctgaacagctgtcaaatagtagtatgtgcagc
agtccggatgaaaataactttgacgggatcaagcttgaagaaactgaagcttggagtata
aaattatgttattcaactaagctgtctggaatggtactcgcagtttgtccatatcttgat
cgttatttcttggcctctgctggttctgttttctatgtttgtggttttccaaatgataat
taccaaagggtgagaagactagctgttgcgagaacccgatttatgatacggactttgact
gcacattttacaagaatcgctgttggtgattgcagagatggcattctcttcttttcgtac
catgaggatgcaagaaaactggagcaactttattgcgacccagtccagaggctagttgct
gattgcatgcttatggatgctgatactgctgttgtgtcagatcgcaaagggagtgttgct
gttttgtcgcggccgagtcatgtagaagataatgctagtcctgaaagcaacttaacactg
aattgttccttctatatgggtgagattgcgatgagcatcagcaagggttcacttctgtac
aaactccccgctgatgatgcattcagaggttgtgatgttgccaatacagtgttcaatgtt
tcctgcaacagcatcttgatcagcactctgttgggaagcataataagctttgttcctctt
tcaagggaggaatatgaaatcttagaagctgttcaagctcgtcttgttgttcaccctctg
acagcccctattttaggaaatgatcataatgagttccgcagccgcgaaagtgcggtcact
gtgcccagaatacttgatggtgatatgctagctcaatttttggaactcacgagtatgcaa
caagaggcagtgttgtcccttccgcttggttcaccaaaaactgtaatgctgagtctaaag
tcatctcctccaccaattacagctaatcaggtcgtgcgcattcttgaacgagttcattat
gccctcaattga
DBGET
integrated database retrieval system
