Daucus carota (carrot): 108222834
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Entry
108222834 CDS
T05350
Name
(RefSeq) CLIP-associated protein
KO
K16578
CLIP-associating protein 1/2
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dcr03036
]
108222834
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
dcr04812
]
108222834
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
108222834
Cytoskeleton proteins [BR:
dcr04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Cytoplasmic linker proteins (CLIPs)
CLIP-associating proteins
108222834
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLASP_N
CEP104-like_TOG
HEAT_EF3_N
XMAP215_CLASP_TOG
HEAT
HEAT_EZ
TOR1L1_N
HEAT_2
Vac14_Fab1_bd
Adaptin_N
Cnd1
UTP20
Tti2
HEAT_Maestro
MMS19_N
INTS1_R4
MMS19_C
RRP12_HEAT
Dopey_N
V-ATPase_H_N
UNC45-central
SPO22
SEN1_N
Rrn6_HB
Motif
Other DBs
NCBI-GeneID:
108222834
NCBI-ProteinID:
XP_017252249
UniProt:
A0AAF0X7F8
LinkDB
All DBs
Position
5:36287615..36301353
Genome browser
AA seq
1433 aa
AA seq
DB search
MEEALEMARSKDTKERMAGVERLHQVLEASRKSLSSSEVTVLVDCCIDLLKDNNFRVSQG
ALLSLSSAAVLSGEHFKLHFNGLVPAVVERLGDSKQPVRDAARRLLLTLMEVSSPTLIVE
RAGSYAWMHKSWRIREEFARTVTSAIGLFASTELPLQRAILPSILQMLNDSHPGVREAAI
VCIEEMYTHIGPQFRDELLRHHLPTSMARDINARLERIQPKSSLSDGRISNYASGDVKSS
SLHPKRSSPKAKSSSREASLFGGDSDLTEKPVEPIKVYSEKELIREFEKISLTLVPEKDW
SVRIGAMQRVEALVIGGAADYPCFRGLLKQLVGPLSTQLADRRSSIVKQGCHLLCFLSKE
LLGDFEACAEMLIPVLFKLVVITVLVIAESADNCIKTMLRNCKVSRVLPRIAECAKNDRN
AVLRARCCDYALLILEYWADAPEIQRAADLYEDFIKCCVGDAMSEVRSTARACYRMFANT
WPERSRRLFSCFDPVIQRLINDEDGGMHKRHASPSLRERNSQMSANSQTSVSSTLPGYGT
SAIVAMDKNASITSRASLSSGLFSSQATSVGKGAERSLESVLNASKQKVTAIESMLRGLD
ISGKGQSVSLDLGVDPPSSRDPPFPLAAPASTSLANSLSLDSTSGFLKGNSRSGGLGMSD
IITQIQASKDPSKLSYRGGIGSEPLSTFSSFSGKRGSERHQERGHFEETDIREARRSVNL
HSDRQYLDSSYRDANVRDSQNSYIPNFQRPLVRRNVAVRASAGRRRSFDDNQFSVGEMSS
YVEGPASLNDALSEGLSNSSDWNARVAAFNYLRSLLQQGTKGVQEVTQSFEKVMKLFFQH
LDDPHHKVAQAALSTLADMIPACRKPFESYMERILPHVFSRLIDPKESVRQPCSTTLDIV
GKTYGVDSLLPALLRSLDEQRSPKAKLAVIEFAIGSFKKHAQNAEGSGNTGILKLWLAKL
TPLVHDKNTKLKEAAITCIISVYSYFDSAAVLNFILSLSIEEQNSLRRALKKNTPRIEVD
LMNFLQNKKERQRPKSSYDPADVVGTSSDEGYVVAPKRSHLYGRYSSGSIDSDGGRKWSS
GQDLAHNTNVIGHMSSSDTQDHLYHGHESVSNTDRNLRSGDVNYGISIPSENLGSWNYRQ
ETNGVHLEVSSPKHNDMNGLADSEHQWVSTGITTDNGAAQIDHSKLAINSNPVPDTELSI
PQILHLICNGNDEGSSASKRDALQQLVETSVANDHSIWTKYFNQILTVVLEILDDSDSSI
RELALLLVVEMLKNQKDPMEDSVEIVIERLLHVTKDPVAKVASEAESCLTLVLSQYDPFR
CLSVVVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMTQLPSFLPSIFEAFGNQSADVRK
TVVFCLVDIYIMLGKAFLPYLEGLNSTQLRLVTIYANRISLARTGTPIEANNE
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagctctagaaatggcgcgttcgaaagacaccaaggagagaatggcgggagtt
gagcggctccaccaggttctagaagcttccagaaagagcttatcatcatctgaagtcact
gtattggttgattgctgtatagatcttctcaaggataataattttagggtttcgcaaggg
gctttgttgtcgctttcctcggctgctgtgttgtctggcgaacattttaagcttcatttt
aatggacttgtgcctgccgttgttgaacgcctcggtgatagtaaacagcctgttcgcgat
gctgcacggaggcttttgctcactcttatggaggtctcctcaccaacactcatagttgaa
agggctggatcatatgcttggatgcacaaaagttggagaatcagagaagagtttgcgcgg
actgttacatcagcgatcggtcttttcgcatctactgagcttcctctacaacgtgctatt
cttccttctattctgcaaatgttgaatgactcgcaccctggggttcgtgaagcagctata
gtatgcatagaggagatgtacactcacattgggcctcaattccgtgatgagctcctgcgt
caccatcttcctacatcaatggcaagagatattaatgcgaggttagagaggattcagcct
aaaagtagcctttcggatggacgtattagtaattatgctagtggagacgtgaagtcttct
agccttcatccaaaaagaagcagccccaaggcaaagagttcatcccgtgaagcgtctctg
ttcggaggagacagcgatttgacagaaaaacctgttgagccaatcaaagtctactctgag
aaggagctaataagggaatttgagaaaattagtttgactcttgttccagaaaaggattgg
tcagtacgcattggggctatgcagagagttgaagctcttgttattggaggtgcagctgat
tatccatgtttccgtggactcctgaagcaactagttggtcctctaagtacacagttagct
gatcgacgatctagcatagtaaaacagggttgccacttgttatgctttctatcaaaagag
ctccttggtgattttgaggcatgcgcagagatgctcattccagtcctttttaaacttgtt
gtgataactgtgcttgtaattgcggagtctgcggacaattgcataaaaactatgttgcgt
aactgcaaagtttctcgtgtacttcctcgaatagctgaatgtgcaaagaatgaccgtaat
gctgtacttcgcgcgagatgttgtgactacgcacttctgatattagaatactgggctgat
gcacctgagattcaacgtgctgctgatctctatgaagattttattaaatgttgtgttggt
gacgcgatgagtgaggtgcgatcaactgctagagcttgttacaggatgtttgcaaatact
tggcctgagcgctcccggcgtttattttcatgctttgatcctgtcattcaacgtttgatc
aacgatgaggatggcggtatgcataaacggcatgcttctccctctcttcgtgagaggaat
tcacaaatgtcagcaaactctcaaacttcagtttcatcaactttacctggatatggaaca
tccgctattgttgccatggataaaaatgcaagcataacctctagggcatcactgtcttct
ggtcttttctcctcacaagcaacgtcagttggcaaaggtgcagaacgtagcctggaaagt
gtgttgaatgcaagcaaacaaaaggttacagctattgaaagcatgctacggggtctggat
atatctggaaaagggcaatcagttagtctggatctaggagttgacccaccatcatctcgt
gatccaccattccctcttgctgcccctgcctcgactagtctcgccaattctttatctctg
gattcaacatctggttttttaaaaggtaatagtcgtagtggtggcttgggaatgtctgac
attatcactcagattcaagcatctaaagatccaagtaagttatcatatcgtggtggtatt
ggatctgagccgctgtcaacattttcatcattctccggaaaaagaggatctgaaaggcat
caagaaagaggccattttgaagagactgatattagggaggctaggcgatccgtgaactta
cacagtgacaggcagtacttagattcatcctacagagatgcaaatgttagggactcgcaa
aacagttacattccaaattttcagcgtcctcttgtgagaagaaatgtagctgtgcgagca
tctgccggcaggaggaggagctttgatgataatcagttctctgtgggtgagatgtcaagc
tatgttgaaggtccagcctctctgaatgatgctcttagtgagggacttagtaatagctca
gactggaatgcgagggtagctgcatttaattatctgaggtctttattgcagcaaggaaca
aaaggtgttcaggaagtcacacagagttttgaaaaggtgatgaagttattctttcagcac
ttggatgatccacaccacaaagttgcacaggcagctctttccacacttgcagatatgatt
ccagcttgtcgaaaaccttttgaaagttacatggagaggattctgccccatgttttctca
cgtctaattgatccgaaggaatcagtaaggcaaccgtgctccacaacactggatattgtt
ggtaaaacttatggcgtggattcccttttaccagctttgcttcgttcactagatgagcag
aggtcaccgaaggcaaagttggctgttattgagtttgccattggttcttttaagaagcat
gctcaaaatgctgaaggctctggcaatactggcattcttaaattgtggcttgccaagttg
acaccattggtgcatgataagaatacgaaactgaaggaagcagctataacgtgcattata
tcagtttactcgtacttcgattcagctgcagttcttaactttattctgagtttatctatt
gaagaacagaattctttaagacgggctctgaagaagaatacaccacgtatagaagttgac
ttgatgaacttcttgcagaacaagaaagagcgacaacgccctaaatcctcttatgatcct
gctgatgttgttggaacatcttctgatgaaggatatgttgtagctccgaagaggagtcac
ttgtatggaagatactcttccggttcaattgacagtgatggtggcaggaaatggagttct
ggacaagatttagcacataatacaaatgtaattggtcatatgtcatcgagtgatacacaa
gatcacttgtatcacggtcacgagagtgtttctaacacagaccgtaatctgagatccgga
gatgtcaattacggaatcagcattccaagtgaaaatttgggatcctggaactataggcaa
gagaccaatggcgtgcatttagaggtttcatcaccaaagcataatgatatgaatgggttg
gctgactctgagcatcaatgggtctctacaggaattactactgataacggggctgcgcaa
attgatcattcaaaacttgcaattaatagcaacccggttccagatacagaactgagcatc
cctcaaatccttcatcttatatgcaacgggaatgatgaaggttctagtgcaagcaagcgc
gatgcacttcaacagctagttgaaacttctgtggctaatgatcattccatatggactaag
tacttcaatcaaattttgacggttgtacttgagatattggacgactcagattcatctatt
agggagcttgctcttttgttggttgttgagatgctaaagaatcagaaagatccaatggag
gattctgttgagattgtgattgaaagactgctccatgttacaaaggatcctgttgcgaaa
gttgctagcgaggcagaaagttgtttgactttggttttgtctcagtatgacccgttcaga
tgtttaagtgttgtcgtccctttattggtaaccgaagacgagaaaactctagttacatgc
ataaactgcttaacaaagcttgtgggcaggctctctcaggaggaactaatgacacagcta
ccatcatttttaccttccatttttgaagcttttggaaaccagagtgctgatgttcgcaag
acggttgttttctgtttagtggacatctatatcatgcttggtaaagcattcttgccatac
ttggaagggcttaacagtacacagttgcgattggttacaatttacgctaaccggatatca
ctggctaggactggcactccaatagaagcaaacaatgagtaa
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