Daucus carota (carrot): 108222846
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Entry
108222846 CDS
T05350
Name
(RefSeq) E3 ubiquitin-protein ligase listerin isoform X1
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dcr03009
]
108222846
04121 Ubiquitin system [BR:
dcr04121
]
108222846
Enzymes [BR:
dcr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108222846
Ribosome biogenesis [BR:
dcr03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
108222846
Ubiquitin system [BR:
dcr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108222846
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
zf-RING_2
zf-rbx1
FANCL_C
zf-ANAPC11
zf-C3HC4
zf-RING_16
zf-C3HC4_2
RINGv
ParcG
IBR_1
zf_RING_Vps8_fungal
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
108222846
NCBI-ProteinID:
XP_017252266
LinkDB
All DBs
Position
5:37154220..37184351
Genome browser
AA seq
1888 aa
AA seq
DB search
MGKQKGDAARSKARPSSSSMAASLLPTAGASVGFGGYVGATRLDTSASNQQAGVPLVDID
SEVAQHLRRLARKDPTTKLKALTSLSRLMQKKSPEEVSPIIPQWTLVIQAFEYKKLLLDY
NREVRRATHDTMANLVTVVGRGLAPHLKSLMGPWWLSQFDPVNDVSQAAKQSLQAAFPAQ
EKRLDALVLCTAEVFMYLDDVLKLTPKTMFDKEVASDEAEEIHHQVISSALLSLATLIDV
LLSPEAKHSSKAKEKTIYCAQKLLVTHKCFIGFLKSANPATRSSTYTVLSSYIKNIPQVF
DEENINNISGSIFGAFQEKNPACHSAMWDAVLQYLQKFPDSWTPINQKNVLNQLSNFLKN
GCFGSQQVSYPVLVLLLDFLPPKAIQGEKFFLNFFQNLWAGNSLSHSLNAWVALLSAIRE
CCLWLIKNASRFCGDGADAINHFQYTIFEKIFLKLFWHDYLNFINANYPGRLISRDSTEL
VGSIKDNPDKNIIEVLDRNYPNYPMGFQEEWGKCIVEILSGLYSLKIDLLVSFCATFEEN
CIYIFKQTASNKSPGSLERVNQFLLLVDEHAAQKGESWPLDHLVGPMLAKSLPLIKSLDS
PSTVYLVEAAVSIFGSRQIVQKLLSADEHTCGHQSKASSKELDLDQFLRFFEENFVAWCL
QESSYSTSARLDLLLALLDNECLTQQWDVIIRHAASFSHVESGTHTQDSKHIAVLALLLE
KTNQTIKKRKLGVELISHPGPQPDYWHHQLLDATAITVARSCPPFGSSDPRFLCAVLGDS
IVGDRTIFVARDTSFLIYNELLRKLLSFIGDSSFISVRDVRKLLIAEECDFKHGFESSED
VLAMAQFSLDVLEGSFFGLSIFTEESELVSSILAAILVIDFESSLAAVFREEQNDESKQE
LNARLSFCQRVHAFRCKVEKQFCRSLSINNKKRLESVLVQFVMGSLFEEVMLEIDQIALL
CCVWILEILEILSQDQAEEQYILDQFLNEGNIGSLQILPVNLQELKNLKFIALVEQLINK
LGFDRVFAAQISPTLPQSVELTVKVMSPETHHQRAWLAAQMLCTWKWPGGSVLSSFFPQL
TAYAEHDNNSSGGYLLDSIVDILLDGALSQEGICESSACDVLAASCEEFESISEPHLKAL
VSLFNTLFEKNIWGAEKAAFYFKVLVDRLSIGGSVNLHCLKILPPIIGIIIIPQCMFCDE
SSVGVKSDSFDGIQLHNTVEDWLQKTLSLTSLTAWQTDMDDWLQLVISCYPLKNVGGTRP
LKPVRDISSVERALLVELFRKLRHMVSASPATKKLPMVQMSLSKLIVVLVGYCWNELKED
DWEFLLYQCRLWIEALVVMMEEMSEDVDDAITNQSDSNNLEVIIEKLKQAVSLVKLSATK
YARNALVSFSIFCRLVKLHMTGDLDASTTLKSDKWDLTMHRIYEGILRIFFSTGVAEAIA
SSYHYEASLIIASARLVHPHFWELVASHVVDSSPHSRDRAVKSVEMWGLSKGPISSLYAI
LFSSKPVSCLQFAAYVMLSSDTVLHMAFVKENPSPPVDEGTTDTHDNTHLTSSSEDNDLL
REEISFMLIGSPRDILDSDLMSEKRVNVFLAWSLFLSYLLSLPSSSPARERLVQHIKDFA
HPAILDCLFHHIPLESCMPRGLKKKELSAVLSSIGPAAASAITTGSAMSGVELLWPLGPE
TMAKLACTVFGLMLCILPAYVREWFGNIRNRSTLNAVESFTRVWCSPPLITNELSQINKA
NYSDENFSVVVNKSANEVVATYKKDETGMDLVIRLPDSYPLKLVIVNCTRSLGISEAKQR
KWEMSMMSFVQNQNGALAEAIRIWKSNFDKEFEGVEECPICYSVVHTSDHNLPRLACRTC
KHKFHSACLYKWFSTSHKSTCPLCQSPF
NT seq
5667 nt
NT seq
+upstream
nt +downstream
nt
atggggaaacagaaaggagacgcagctagaagcaaggcacgcccctctagcagcagtatg
gctgcttcgcttttgccaactgccggtgcatctgttggatttggaggttatgtaggtgcc
acacggctcgatacttctgcgtcgaatcagcaagctggggttcctctggtggatattgac
agtgaagtggctcaacacctgaggaggcttgcgaggaaagaccccacaactaagcttaaa
gcattaacctctctttcgaggctgatgcagaagaaatctccagaggaagtgtccccgatt
attccacagtggacacttgtgattcaggcatttgaatacaaaaagctgcttctagactat
aatagagaggttcgccgagcaactcatgacaccatggctaatcttgtcactgttgtgggg
agaggtttagctccacatctgaagtctcttatgggaccatggtggttgtctcagtttgac
cctgttaatgatgtttcccaagctgcaaaacagtcgctacaggcagcgttcccagcacaa
gaaaaaaggctagatgctttggtgttatgtacggctgaagtttttatgtatttagacgat
gttcttaaactcactccaaagactatgtttgataaagaagttgcttctgatgaggcggaa
gagatacaccatcaggtgatttcatcagcactactttcactggcgacccttatcgatgtt
ctgttgagtcctgaagcaaaacattcttcaaaagctaaagaaaaaacaatttattgtgct
caaaaactacttgttactcataaatgttttatcgggttcttaaaatcagcaaaccctgct
acacgatcatctacatataccgtgttgagtagttacataaaaaacattccccaggttttt
gatgaagaaaatataaataatatttccggaagtatatttggtgctttccaggagaaaaat
ccagcttgtcattcagcaatgtgggatgctgtattacagtatttacaaaagtttccagat
agttggactcctataaatcagaagaacgtactaaatcagctaagcaattttcttaagaac
gggtgttttgggtcccagcaggtttcttatccagttttagttctacttttagattttctg
cctccgaaggcaatccagggtgagaagttctttctcaattttttccagaatctttgggca
ggaaatagtttatcccactccctgaatgcatgggttgcacttctctcagcaattagagaa
tgctgcctctggttaataaagaatgcgtcaagattttgtggtgatggagcagatgccatt
aatcatttccaatatactatctttgaaaagatttttctgaagcttttttggcatgattat
ctgaacttcataaatgcaaactatcccggaagactcatctccagagattccacggaatta
gtcggatctatcaaggacaatcctgacaaaaacattattgaagttctggacagaaactat
ccaaactatccaatgggttttcaggaagagtgggggaaatgcatagttgaaattctttca
ggtttatattcattaaagattgatcttctcgtgtccttttgtgcaacatttgaagagaac
tgcatctatatctttaagcaaacagcatcaaataaaagccctggaagtttggaacgagta
aaccagtttttgttgctggtggatgaacatgcagcacaaaaaggtgagagttggccctta
gatcatttagtgggacccatgctagctaagtctttgccgctcatcaaatccctcgactct
ccgagtaccgtgtaccttgttgaggctgcagtctccatatttggatcacgccagatagtt
caaaaacttctttctgctgacgaacatacttgtggtcatcaatctaaagcaagcagcaaa
gaactggatttggatcagtttctgcgattttttgaagagaactttgttgcctggtgcttg
caggaaagtagttactctacaagtgctcgcttagatctccttctggcattgctcgataat
gaatgtttaactcagcaatgggatgttattataaggcatgcagcaagttttagtcatgtt
gaatctggtactcatactcaggattccaagcacattgctgtgttggccttgcttctagag
aaaactaatcagacaattaaaaagaggaaactgggagtagaattgatcagtcatccagga
ccgcaacctgattattggcatcatcagcttctagatgcaactgccatcacagttgcacgc
tcatgtcctccttttggaagttccgaccctcgatttttatgtgctgttcttggtgattca
atagtgggcgatcgaaccatctttgtggcaagagatacatcattcttgatatataatgag
cttcttaggaagctgctctcatttatcggagattctagctttatatctgttagggatgta
cgtaaattgttaattgctgaagaatgtgattttaaacatggatttgaatcttcagaggat
gtgcttgcaatggctcaattctctttagatgttcttgaaggtagcttcttcggcttaagt
atttttacagaggaaagtgagctagtttcaagcattttagctgctatccttgtgattgat
ttcgaaagtagcttagcagcagtatttcgtgaggagcaaaatgatgaatcaaagcaagaa
ctcaatgccagactaagtttctgtcagcgtgtgcatgcttttcggtgcaaggtagagaaa
cagttctgcagaagcctaagcattaataacaagaagcgtttagaaagtgttttggttcaa
ttcgtcatgggttcattgtttgaagaagtaatgttagagattgatcagattgcactgtta
tgctgcgtctggatacttgaaattctggaaattctctctcaagatcaagcggaggagcaa
tatatattagaccagtttttaaatgagggtaatattgggtctctgcagatcttacctgta
aatttacaagaactcaagaatctaaagtttattgctctagttgaacaactcataaacaaa
ttgggttttgatagagtttttgcagcgcaaatttcaccaactttgcctcaaagtgttgaa
ctgaccgtcaaagtcatgtcacctgaaacacatcaccaacgtgcgtggcttgctgcccaa
atgttatgcacgtggaaatggccaggtggtagtgtcttgagctcgttctttcctcagtta
actgcctacgcagagcatgataataattcctcggggggttatctgttggattccatagtt
gacattttgcttgatggcgctctttcccaagaaggcatctgtgaatcaagtgcatgtgat
gtattggctgcttcatgtgaagaatttgagagtatcagtgagccccatttgaaagctctt
gtttcgttgtttaacaccctttttgaaaagaatatatggggtgcagaaaaggctgcattt
tactttaaagtactcgtggatagactttccattggcggatcagtgaatctgcattgctta
aaaatacttcccccaattataggtatcattataatcccacaatgcatgttttgtgatgaa
tccagtgttggtgtcaaatctgattctttcgatggcattcaacttcataacacggttgag
gattggctccaaaagaccttgtctttgacttctttaactgcatggcaaacagatatggac
gactggcttcagctagttatatcctgttaccccttgaaaaacgttggaggaactcgaccc
ttgaaacctgtgagagatattagctctgtggagagagctctcctagttgaattatttaga
aagctgcggcatatggttagtgcgtcacctgcaacaaagaagctgccaatggtgcagatg
tcattgtcaaagttaatagtggttttagtgggatactgctggaatgaacttaaagaagat
gattgggagtttttgttgtatcagtgtagattgtggattgaagcattggttgtgatgatg
gaggagatgtctgaggatgtagatgatgccatcacaaatcaatctgattctaacaacttg
gaagttattatagagaaacttaagcaagctgtttcacttgtaaaactttctgctacgaaa
tatgcaaggaacgcactggtctcattctctatcttttgtaggcttgttaaactacacatg
acaggagatttagatgcctcgacaaccttaaaaagtgataaatgggacctcactatgcac
cgtatatacgaaggtatacttcgtatattcttttcaaccggtgttgcagaggccattgca
agttcatatcattatgaagcttcattaatcatagcttcggctcggcttgttcatcctcac
ttctgggagctagttgcctcccatgttgttgattcctctccacattctagagatagagct
gttaagtcagtagaaatgtgggggctgagtaaaggacccataagctcattgtatgcgatt
ctgttctcctctaaaccagtttcttgcctacagtttgctgcttatgtcatgctctcatct
gacactgtcttacacatggcttttgtcaaagagaacccatcacctccagttgatgaaggt
acaaccgatacccatgacaacactcatcttacgtcatcttcagaagataatgatctcttg
agagaggaaatttctttcatgttaataggatcaccccgtgacattcttgatagcgatttg
atgtcagaaaaacgggtgaatgtgtttcttgcttggtctttgtttctttcatatttattg
tccttaccatcatcatctccggctagagagcgattggttcaacatataaaagattttgct
catccagctatattagattgtctcttccatcatattcctttagagtcctgtatgcctcgt
ggcctcaaaaagaaagaactctctgctgtgttatcaagtattggacctgcagcagcaagt
gccatcaccacagggtcagctatgtcaggtgtggaattgctctggcccttggggccagaa
acaatggcaaaacttgcttgtacagtatttggattgatgctttgtattcttccagcttat
gtaagggagtggtttggtaatatacgcaatcgctctacattaaatgcagtagagtctttt
acaagagtttggtgtagtcctcccctcataacaaatgagctttctcagatcaacaaggcc
aactattctgatgagaatttttcggtggttgtaaacaaatcagcgaatgaggtggttgct
acctataaaaaggatgaaacaggaatggatctagtaattcgccttcctgattcctaccca
ttaaaattggtgattgttaactgtacgaggagccttggcataagtgaagcaaaacagagg
aaatgggagatgtcaatgatgtcattcgttcaaaaccagaatggagctttggcggaagca
atacgtatatggaagagcaattttgacaaggaatttgaaggtgtcgaggagtgccctatc
tgttacagcgttgttcacacttctgaccataacctccctcgtcttgcttgtagaacttgc
aagcacaagtttcattcagcttgtctatacaagtggttttcaacttcccacaagtcaact
tgcccactgtgccagtctccattttaa
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integrated database retrieval system
