Daucus carota (carrot): 108222877
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Entry
108222877 CDS
T05350
Name
(RefSeq) ABC transporter F family member 1
KO
K06185
ATP-binding cassette, subfamily F, member 2
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dcr03009
]
108222877
Ribosome biogenesis [BR:
dcr03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
108222877
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC_tran_Xtn
AAA_21
SMC_N
AAA_29
AAA_23
MMR_HSR1
AAA_15
RsgA_GTPase
AAA_22
AAA_28
DUF5906
AAA_16
AAA_24
MukB
AAA_30
VapE-like_dom
Ig_F54D1_6_2
Motif
Other DBs
NCBI-GeneID:
108222877
NCBI-ProteinID:
XP_063950177
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All DBs
Position
5:38447396..38452962
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AA seq
593 aa
AA seq
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MVSDASKKKAAQKKAAAAAKRGGKSVAAAIAKVSSSTSTDNLSSRVENLQISDRTCTGVL
CSHPLSRDIRIESLSLTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGRRELP
IPDHMDIFHLTREIEASDMSSLQAVINCDEEKIKLEKEAEVLAAQDDGGGEALERIYERL
DAMDAATAEKRAAEILFGLGFTKEMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPT
NHLDLEACVWLEEMLKKFERILVVVSHSQDFLNGVCTNIIHMQSRQLKMYTGNFDQYVQT
RSELEENQMKQYKWEQDQIANMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTQKVV
RDHVLVFRFVDVGKLPPPVLQFVEVSFGYTPDNLIYKNIEFGVDLDSRIALVGPNGAGKS
TLLKLMTGDLVPNEGMVRRHNHLRIAQFHQHLTEKLDMEMSALQFMISEYPGNEEEKMRA
AIGRFGLTGKAQVMPMKNLSDGQRSRVIFAWLAYRQPQMLLLDEPTNHLDIETIDSLAEA
LKEWDGGLVLVSHDFRLINQVAKEIWVCENQAVTPWSGDIMGFKAHLKKQAGL
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atggtgtctgatgcaagcaaaaagaaggctgcccagaagaaggcagctgcggcagccaaa
aggggtggcaaatctgttgctgctgctattgccaaggtttccagcagtactagtaccgat
aatttgagtagtagggttgaaaatcttcagatttctgatcggacctgtactggggttctc
tgttctcaccctctttccagagatattcgtatagagtcgctgtctctgacctttcatgga
catgatcttattgttgattctgagctggagcttaattatggcagacgatatggtttgctc
ggacttaatggctgcggaaaatctactctacttacagctatagggcgccgagaacttccg
attcctgatcacatggatatttttcatctcacgagggagattgaagcatctgatatgtct
tcactccaggctgtgataaattgtgatgaagagaagattaaactggagaaagaagctgaa
gttttggccgctcaggatgatggtggaggagaagctcttgagcgcatatatgagcgtttg
gatgcaatggatgcagcaactgctgagaaacgtgctgctgaaatattatttggtcttggt
tttaccaaagagatgcaagcgaagaaaacccgggacttttctggtggatggagaatgagg
attgctttagcacgtgccctgtttatgaacccgactatcttgttgcttgacgagcctact
aatcatcttgatttagaagcttgtgtgtggctggaagagatgctgaagaaattcgagcgt
atcttggtggttgtttctcactcccaggactttctaaatggtgtctgcacaaatatcata
cacatgcagagcagacagttgaaaatgtatacaggaaactttgaccaatatgttcaaacc
cgttcagaactcgaggagaaccagatgaagcagtacaagtgggagcaggatcagattgct
aatatgaaagagtacattgctcgatttgggcatggttcagctaaattagctcgccaggca
cagagcaaagaaaaaactttagcaaaaatggagcgtggtggcctcacgcagaaagtggtc
agggaccatgttctggttttccgattcgttgatgtagggaaacttccaccaccagtgttg
cagtttgtggaagtttcgtttggctataccccagataacctcatctacaagaacattgag
tttggtgtcgatcttgactcaaggatcgcattggttggacccaatggtgctgggaagagt
acattgctgaagctgatgacaggggatctggttcccaacgagggcatggtacgtcggcac
aatcacttgcgcattgcccaattccatcaacacttgacagagaaacttgacatggaaatg
tcggctctccagttcatgataagtgagtaccctggaaatgaggaagagaagatgagggca
gccattgggaggtttgggctaactgggaaagctcaagtaatgccaatgaagaacttgtca
gatgggcaaagaagtcgtgtgatttttgcctggttagcgtacaggcagccccagatgttg
ctcctggacgagccaactaaccatttggacattgagactatagactcgcttgctgaggca
ttgaaggagtgggatggaggcttggttctcgtaagccatgacttcaggcttataaaccaa
gtggcaaaagaaatctgggtgtgtgaaaatcaagctgtgaccccctggtctggtgatatc
atgggtttcaaagcacacttaaaaaaacaagctggtctataa
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