Daucus carota (carrot): 108222959
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Entry
108222959 CDS
T05350
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108222959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dcr04121
]
108222959
Enzymes [BR:
dcr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
108222959
Ubiquitin system [BR:
dcr04121
]
Ubiquitin ligases (E3)
HECT type E3
108222959
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_TRIP12_N
HECT
AIPR_N
Motif
Other DBs
NCBI-GeneID:
108222959
NCBI-ProteinID:
XP_017252444
LinkDB
All DBs
Position
5:28373467..28382074
Genome browser
AA seq
1547 aa
AA seq
DB search
MGNRGQKRAETDEELPADKRPCSSLDNRASTSGTSAQIPVISTNLLQEGDMDTSSSNSDS
HHSDEEKDSAYGSCDSDEMADIDQRQEMYRGYQHRRTSDDHSRLKAVLLSLSNEVEESAL
LAALTELCELLPFCTEDSLSSLLVQSLSPIIVKLSKHESNPDVLLLSIRAMTYLCDVHTR
ACSYLVKYDAVPAICQRLLNIEYLDVAEQCLQALEKISREKPLPCLQAGAILAVLKYIDF
FSTSVQRVALNTAVNICKELPADCPPSLMEAVPLLCNLLQYEDRQLVENVAICLIKIAKQ
VCHSSEKLDELCKHGLIHQATHLIDLSSQTTLSPSVQSGLIGILVKLASGSVSAVRTLFE
LNISNILKDILSAYGRSHGTPSLIMVDSTCEVHEVFKLINELLPSVSQDQESDINRDKKI
FLLNQPDHLERFSMDLLPVLIQVVNSGGNVYGCFCCLSVVNKLVYISNSDMLLKLLQSSN
ISSFLAGVFTRKDHHVLMLALQIVENILQKHSDVLLSSFVKEGVLFAVDTLVAPNRGSQY
LFQMFNGIQLSSDQHQKSAAKNEPNCLCYAFETTLSSSTSEARTCKLEKDSVYNLAERIR
KIYFATELSNSKERTSDIFQDLKAISASLTDMVNLSVSSGASALKEADFDDILRKIMSQL
SGREPISTFEFLGSGIIKSLLGYLSVGHCIRGKPDKNGGSSCDIYTVEKRFEVLGRLLFP
SSDMVLDPYLTELIHKLQSALSSVENLPVMLNHGSKQRKQYACVPYGRYISHPCMKVQFV
RGEGELNLDDYSGQVLTVDPFASLDAIEGYLWRKVTGKRTKGTSPATSPSASGSPQRGSS
EYTDSESMSQDLQDMQEDKPNLKQAESGEHGKLRQTTSEVHTESGEQKQHVCFVQEDSNL
ISVCPESCNCGDASSNLIFYLNEQHLDHTLTLYQAILQHHTKAEQENITSASLWSRTYEL
TYRRVLKCKQGCSGLQHQQAPCSQALEKNLAYPKYTSFFSDMFVSDLASDIEKSTPAYDI
LLLLKVLESMNRFRFHLISRERVCSFAEGRIHKLDDLKVSVAYVTQNEFVNCRLTEKLEQ
QMWDPLSVSIGSMPAWCSQLMSSCPFLFSFEVRCRYFQLAAFGQRQHQPHLSSNNAGGSN
SRQHHISGLPRKKFLVHRDQILESATRMMNLHASQKVVLEAEFEDEVGTGLGPTLEFYTL
VSYEFQKSGLGMWRGDNMSFKASKSFQAEDASGLSTLFGLFPRPWSSQESNGVEFTEVIK
KYTLLGQVVARALQDGRILDLPLSKAFYKLILGQDLTLYDIQSFDPGLGTTLVEFQAIVE
RNKYMKYVSGNISTCGTESCFRNTRIEDICLDFSIPGYPDFVTSVSNSKMVNMNNLEEYV
SLLVDATIHSGISRQVEAFKLGFNQVFPVKNLQILTEEELEHLLCGECEVWNMNELLDHI
KFDHGYTASSPPVVNMLSIIREFDRQQQKAFLRFVTGAPRLPHGGLASLNPKLTIVRKHC
SGSADNDLPSAMTCANFLKLPPYSSKEKMKEKLMYAITEGQGSFDLS
NT seq
4644 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatcgaggtcagaaaagagcagaaacggatgaagaattgccggctgataagcga
ccatgtagttcactggataacagagcaagcacgtctggcacatctgcacaaattccagtg
atctccactaatttattgcaggagggggatatggatacatcatcttcgaactctgattct
caccattcagatgaagaaaaggactctgcctatggttcttgtgattcagatgaaatggct
gacatagaccagaggcaggagatgtatcgtggttatcagcaccgaagaacttcagatgat
cattctagactaaaggcagttttgttaagtttgagcaatgaggttgaagaatctgcttta
ttagctgcacttacagagctctgcgagttgttgcctttctgtactgaggactctttatca
agtttgctggtccagtcgttgtcaccaatcatcgtaaaattatctaaacatgagagcaat
ccggatgtactgcttttgtctattagagctatgacttatttatgtgatgtccatacacga
gcctgcagttatcttgtcaaatatgatgcagtacctgcaatttgtcaaagactgctgaac
attgagtacttggatgtagctgaacaatgtttgcaagcattagagaaaatatcacgtgag
aaaccgcttccttgtttacaagctggggcgatattggctgttctgaaatatattgatttt
ttctcaacaagtgtgcagagggtcgcacttaatactgcagtgaacatatgtaaggaactt
cctgctgattgtcctccatctttaatggaagcagtcccattattgtgtaaccttctgcag
tacgaggataggcagcttgttgagaatgtagctatttgcttgataaaaatagccaagcaa
gtttgtcactcttctgagaagttagatgagctttgcaagcatggtttgattcatcaggcc
acacatcttattgacttgagtagtcaaactactttatctccatcagttcagagtggtttg
ataggaatacttgtcaaacttgcttcaggttctgtttcagctgtcagaactttgttcgag
cttaatataagcaacatactaaaggacatcttgtctgcttatggccgttcacacggaaca
ccttcgcttattatggtcgatagcacttgtgaggttcatgaagtgttcaagctaataaat
gagctgcttccttctgtatcccaagatcaagagtcggatataaacagagacaagaaaatc
tttttgctaaatcaaccagatcatctggagaggttttctatggatttactgcctgtccta
atccaggtggttaattcgggtggtaatgtttatggttgtttttgctgtctatctgttgtc
aacaagttggtttatatcagtaactcagacatgctccttaaattgctccagtcttccaac
atttcaagcttcttggctggtgtatttactcggaaggatcatcatgtgttgatgttagca
cttcagattgttgaaaatatcttgcaaaagcattcagatgtgctcttaagttcctttgta
aaggaaggtgtcctgtttgctgtggacacacttgtggcaccaaataggggttcacagtat
ctgtttcaaatgtttaatggtattcaattatcaagcgatcaacatcagaaatctgctgca
aagaatgaaccaaattgcttatgctatgcttttgaaactactctatcttcatcaacttca
gaagcacggacttgcaagttggaaaaagattctgtttataacctagcggagcgtataagg
aaaatttactttgccactgagttgtcaaactcaaaggaaagaacgagcgacatttttcaa
gatcttaaagcgatatctgcgtcgttgacagatatggtgaacttgtccgtgagtagtggc
gcttcagctctcaaagaagcagactttgatgatattttgcgtaaaattatgtcgcagctt
agtggaagggaacctatttcaacttttgagttcttggggagtggaatcataaagtcttta
ctcggttatctatcagtaggtcattgcatccgtggaaaaccagataaaaatggtggatct
agttgcgatatttacacagtagagaaaagatttgaggtgcttgggcgacttctttttcca
tcgtctgacatggtgttagacccttatttaactgaactgattcataaattgcaaagtgca
ctatcatctgtagaaaatttacctgtcatgttgaaccatggatccaagcagaggaaacag
tacgcttgtgttccatatggtcgctatatttctcatccttgtatgaaagtgcagtttgtg
agaggagagggagagttaaaccttgatgattattctggacaagttctcactgttgatccc
ttcgcatctttggatgcaatagaaggatacttgtggcgcaaggttactggaaagagaacc
aagggcaccagtcctgcaacgtctccatcagcatctggttcgcctcaacgaggaagttca
gaatacactgattctgaaagcatgtctcaggatttgcaagatatgcaggaagacaaacct
aacttaaaacaagcagaatctggagaacatggcaagttaagacagaccacttctgaagtc
catactgaatctggggagcaaaagcaacatgtttgttttgtacaagaagatagtaacttg
atttcagtgtgtcctgaatcctgcaactgcggagatgcttcgtcaaacctaatattttac
ctaaacgagcaacatcttgaccacacattgacactataccaggctattctgcagcaccac
acaaaagcagaacaagagaatattactagtgcgtcattgtggagtcgaacatatgaattg
acttacagaagagttctgaaatgtaaacaaggctgttcaggacttcagcaccaacaggct
ccttgttcacaagcattagagaaaaatttggcatatccgaagtacacttcatttttttct
gacatgtttgtttctgatcttgcttctgacattgaaaagtcaactccagcatatgacatt
ttattattgctcaaagttttggaaagcatgaataggtttaggtttcatctgatatctcgg
gaaagggtatgctcttttgcggaaggaagaattcataagttggatgatttaaaagtttct
gtggcttatgttacccaaaatgaatttgtcaactgtagattgacagaaaaactagaacag
cagatgtgggatccgctatctgtgtccattggtagcatgcctgcatggtgtagccaatta
atgtcctcatgcccatttttatttagttttgaggtaagatgtaggtatttccagttagca
gcttttggtcagcggcaacatcaaccccatctatcatctaataacgcaggaggctccaat
agcaggcagcatcacattagtggcctgcctcgtaaaaagtttctagttcatcgagatcaa
attcttgaatcagcaactcgtatgatgaaccttcacgccagtcaaaaagttgttcttgaa
gcagaatttgaagatgaagttggtactggtcttggtccgacattggagttctatacattg
gtcagttatgagtttcagaaatctggattgggcatgtggagaggagacaatatgtcattt
aaggcctcgaaaagcttccaggcagaggacgcatcagggttatctactctttttggactt
tttcctcgcccgtggtcttcccaggagagtaatggggtagaatttactgaagttatcaaa
aagtatacacttttaggacaggtggtggcaagagctctccaagatggtaggatattggat
cttcccttgtccaaagcattttataaacttatacttgggcaggatctcaccttgtatgat
attcagtcgtttgatcctggactgggcactactcttgtagagttccaagcaattgttgaa
agaaataaatatatgaaatacgtctctggtaatatatcaacttgcggaactgagtcttgc
ttccgaaatacgagaattgaagatatttgccttgatttttctattcccgggtatcctgac
tttgttacttctgttagtaattcaaagatggttaatatgaataatttggaggaatatgtt
tcactcctcgttgatgcaactatacattctgggatttccagacaagtggaagctttcaag
ctggggtttaatcaagtgttccctgtcaaaaatctgcagatccttactgaagaggaactg
gagcatttgttatgtggagaatgtgaagtatggaatatgaatgagcttttggatcacatc
aagtttgatcatggatacaccgctagcagtcctcctgttgtgaatatgctaagtatcata
cgggagtttgatcgtcagcagcagaaagcatttctgaggtttgtaacaggtgcaccgagg
ctccctcatggaggtctggcttcactaaatccaaagttgacaatcgtacggaagcattgt
agcggatctgcagacaatgaccttcccagcgcgatgacttgtgccaactttttgaagcta
ccgccttactcctcaaaagagaagatgaaagaaaagcttatgtatgctataacagaaggg
caagggtctttcgacctttcatag
DBGET
integrated database retrieval system
