Daucus carota (carrot): 108223027
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Entry
108223027 CDS
T05350
Name
(RefSeq) uncharacterized protein LOC108223027 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108223027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108223027
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108223027
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108223027
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
108223027
NCBI-ProteinID:
XP_017252557
UniProt:
A0A164XV02
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Position
5:8368236..8386093
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AA seq
893 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVSELESQIDSFEAEMEGLTVKKGKTRPPRLTHLEASITRHKA
HIMKLELILRLLDNDELSPDQVNDVKDFLDDYVERNQEDFEEFNDVDELYISLPLEKVES
LEDLVTIPPGLVKGVGATSAILSLKPSLTTSSAQLPAALTSTDQPSSSVLEQVEETVFQD
STSDVPKTPSSKSTAVGASAPTPPTGSHTTGIPNNTAHILPGMSTASAIQSGPSPAKGML
EIASAVVSSAPVSISVSTKEEEFTGSPGRKSSPALSETGLRGVGRGSLSSPLSTANPPSS
GSTIPNNGAFGALTPASEIAKRNMVGADERLAGTGIVQPLDSPLSNRIMLSHAAKAFDGI
NMTENGNLGEAAGISPRIFSPGMQWRPGSSFQNQNEVGQLRGRTEIAPDQREKFLQRLQQ
VQQGQSTMLGMPPLAGENHKQFSSQQHNSLLQQFNSQSSAASPQVGLGIGVQAPSVSTVT
SASLQQQPNPTLQQQFSQHGPMSTSLKDSDVGHAKVDELQHQPNVSDDSAAESSPRTGVV
KNLMNEDDIKASYALDTPGGVTGSSTEAAQMPRDVDLSPGQPLQSNQSSGSLGVIGRRSV
SDLGAIGGPSLNSAGMHDQLYNLQMLESAYYKLPQPKDSERAKSYTPRHPAITPSSYPQV
QAPIVNNPAFWERLGADNYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRFHKKYNTWFQ
RHEEPKLATDDYEQGTYVYFDFHISDESQHGWCQRIKTEFRFEYNYLEDELIV
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgggcgctagcagaaaattacaaggcgagatcgatcgagttctgaagaaggttcaagaa
ggcgtcgatgtattcgatagcatttggaacaaggtgtatgatactgataatgcgaatcag
aaggaaaagttcgaggcggacttgaagaaggaaattaagaagctccagaggtatagagac
cagatcaagacatggattcaatccagtgagattaaggataagaaggttagtgcctcttat
gagcaggctctgatggatgcacgaaaacttattgagcgtgagatggaaagatttaagata
tgtgaaaaggaaacaaaaactaaagcgttctctaaggaaggtcttggtcaacagcctaaa
acagacccaaaggagaaggctaaatccgaaacaagggattggttaaacaacgtggtttca
gagttggaatcccaaattgatagctttgaagctgagatggaggggctgaccgttaaaaaa
gggaaaaccaggccacctagattgacacatttggaagcttctataactcgacacaaagct
catatcatgaagttagaattgatccttaggctcttggataatgatgaactgagtcctgat
caggtcaatgatgtcaaggatttcttggatgactatgtggaacgtaatcaggaggacttt
gaagagttcaatgatgttgatgaactttacatttctttaccactggaaaaggtggaatct
cttgaagatctggtcacgataccccctggccttgtcaagggtgttggtgcaaccagtgca
attttaagtttgaaaccctctctgacaacatcttcagctcaactgccggctgctctgaca
tctacagaccagccgagttcttctgtccttgagcaagttgaagagactgttttccaagac
agtacttcagatgttccaaaaactccatcttctaaaagtactgctgttggtgcttctgct
ccaacaccaccaacaggtagccatacgactggcattccaaataacactgctcatatctta
cctggcatgtctactgcttcagcaatacagtcaggtccaagtcctgctaaggggatgttg
gaaattgcttctgctgttgtttcttcggctccagtaagtatatctgtttctaccaaggaa
gaagaatttactggttctcctggtcgcaaatcatcccctgctctttccgaaactggttta
agaggtgttggtagaggtagcctgtccagtccactatcaactgctaatcctccaagttct
ggcagtactattcctaacaatggagcctttggtgcattaactcctgcctccgaaattgca
aagagaaatatggtaggtgctgatgagagacttgccggtactggtatagtgcagccattg
gactcccctctgagtaatagaattatgttgtcgcacgctgctaaagctttcgatggaatt
aacatgactgagaatgggaatcttggtgaagctgcaggtatttcccccaggattttctct
cctgggatgcaatggaggcctggaagttcctttcaaaaccaaaatgaagtggggcagctt
cgtggaagaactgaaattgcacctgaccagagggagaagtttttacagcgtctccaacag
gtacaacaaggtcaaagtactatgctgggcatgcctccccttgctggtgaaaatcacaag
caattttcatcacagcaacacaattcgctcctacagcagttcaattctcagagctcagct
gcctcacctcaagttgggttaggaattggagttcaagcacctagtgtcagcactgtcaca
tctgcctcgttgcaacagcagccaaatccgactcttcaacaacaatttagtcagcatgga
ccaatgtcaactagtcttaaagattcagatgtaggtcatgcaaaagttgacgagttgcag
caccagccgaatgtatccgatgattcagctgccgaatcttccccgaggacaggcgttgtc
aagaatctcatgaacgaggatgatataaaagcttcatatgctttagacacaccaggtgga
gtgactggatcctcaacagaggccgcccaaatgccaagagacgttgatctctctcctggg
caacctctacaatccaatcagtcttcaggaagccttggtgttattggtcggagaagtgtt
tctgaccttggtgccattggtggaccatctctgaattctgcgggtatgcatgatcaatta
tacaatttgcagatgcttgagtctgcatattacaaacttcctcagccaaaagactcagaa
cgtgcaaagagctacaccccaaggcaccctgccataaccccttccagttatcctcaagta
caggcccctattgtcaataatcctgccttttgggaaagacttggagctgataattatggc
actgataccctattttttgcattttactatcaacagaatacttatcagcaatatctggct
gcaaaggaattaaagaagcaatcatggagattccataaaaaatacaacacgtggtttcaa
cgacacgaggagccaaaactggccactgatgattatgagcaggggacatatgtgtacttt
gatttccatatcagtgacgagtcgcagcatggatggtgccaaagaatcaagaccgagttc
agattcgagtacaactatcttgaagatgaacttatcgtttga
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