Daucus carota (carrot): 108223031
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Entry
108223031 CDS
T05350
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1 isoform X2
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03022
Basal transcription factors
dcr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108223031
09124 Replication and repair
03420 Nucleotide excision repair
108223031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcr03021
]
108223031
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108223031
Transcription machinery [BR:
dcr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
108223031
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
108223031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
HEAT_Maestro
DUF6399
Motif
Other DBs
NCBI-GeneID:
108223031
NCBI-ProteinID:
XP_017252565
UniProt:
A0AAF1B286
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Position
5:26393221..26401871
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AA seq
601 aa
AA seq
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MSERQVIKRAKYKSSIKDPGTPGVLTMKRERFVFMPSDPRSLMKLNVEFRFIIGHKFSKE
APNKKALLNLTQDKGESYIFEFDSFPDRDACRDFVAMAIAPPANAGKASSDKPSVPPSSE
QLSTAEMDRRIKLLQVDSELQKLHKEFVMGGVLTEAEFWATRKKSLDEKISSKSKQRVGL
KSDMIFNVKPSSDGQSNRVKYSLTPEIIHQIFAEKPAVRRAYLNLVPKKMTETDFWMKYW
RAEYLHSTKNIVAAAAEAAEDEELAVFLKQDDILASEARRKIRRVDPTLDMEADEGDDYT
HLPDHGLSRDVSKDLTDSQYDLYKRSFLQDLNRHAAVVLEGRSVDVELGDTRSVAEALTR
LKEVESANEASNTHVEQGRSDLISRMAELEDLQGPRDHPVAPLSIKDPRDYFDSQQANAI
KTLGESQSGSKHKKSILNAHEAYGSLRKSISEIKDLGLTDPIIKSEVAMKVFSELTLRIS
NTKYHHGKDPHESILDGLPNATKEEILHQWTSIQELLKHFWSSYPITTTYLHIKVNKVKD
AMSKIYQKLQEIKSSVRQDFRHPVSLLVQPMTQALDAAFAHYEVDFQKRSTKSVERPNGF
V
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagaggcaagtcatcaagcgcgccaagtacaaatcatctatcaaagatcctggc
actcctggtgttttaaccatgaagagggagcggtttgtgtttatgccgagtgatccgagg
tctttgatgaagctcaatgtcgagtttcgatttattataggacataagttcagcaaggag
gctccaaataagaaggctcttcttaatcttacgcaagacaagggtgaaagttacattttt
gagtttgacagtttccctgaccgtgatgcttgccgggattttgttgccatggctattgca
cctcctgctaatgctggtaaagcttcttctgacaaaccctctgttccgcccagcagtgag
caacttagcacagcagaaatggatcgcaggattaagcttttgcaggtggatagtgagttg
cagaaacttcacaaggaatttgtaatgggtggagtgttaacagaggctgaattttgggca
acaagaaagaagtcattggacgagaaaatcagtagcaaatctaagcaaagggtggggtta
aagagtgacatgatattcaatgtgaaaccatcatccgatggccagtcgaacagggttaaa
tatagcttgacaccagaaattattcatcagatttttgctgaaaaacctgctgtacgacgc
gcctatctaaacctagtacccaagaagatgacagaaacggacttctggatgaaatactgg
agggctgaataccttcacagtaccaaaaatattgttgctgctgcggctgaggctgcagaa
gatgaggaacttgctgttttcctcaagcaagatgacatattggcaagtgaagctcggcga
aagatcagacgggttgatccgacattagacatggaagctgatgaaggggatgattacaca
cacctcccggatcatgggctatctcgtgatgtttcgaaggacttgacggactcgcaatat
gatctgtataaaagatcatttctgcaagaccttaatagacacgctgcagttgttcttgaa
ggaagatctgtagatgtggagttgggagatacaaggtctgttgctgaagcacttaccagg
ttaaaagaagttgagtcggctaatgaagcatcgaacacccatgtggagcaagggcgctct
gatctgatatctaggatggctgagttagaggatcttcagggacctcgtgaccatccagtt
gccccgcttagtatcaaggatcctcgtgactactttgattctcaacaagccaatgcaatt
aaaactttgggggagtcccaatctggatcaaagcataaaaaaagtatccttaatgctcac
gaggcatatggttccttaagaaagtcaatatctgaaataaaagatctaggtttgactgat
cctataattaaatcagaagttgctatgaaggtttttagtgaattgaccctgcgtatttca
aataccaagtatcatcatggaaaggatccacatgagagtattttggatgggttgcctaac
gcgaccaaagaagaaattttgcatcaatggacatcaattcaagaattgctgaagcatttc
tggtcatcatatcccattacgactacttatctccatatcaaggttaacaaagtgaaggat
gcaatgtccaaaatttatcagaagctgcaggagatcaagagctcagtgcgacaggatttt
cgccatccagtatcactcctcgttcaaccaatgactcaggctttagatgctgcatttgca
cattacgaagtagactttcaaaagagatctacaaagagtgtcgagagaccaaatggtttt
gtctag
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