Daucus carota (carrot): 108223037
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Entry
108223037 CDS
T05350
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
dcr
Daucus carota (carrot)
Pathway
dcr04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108223037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108223037
03009 Ribosome biogenesis [BR:
dcr03009
]
108223037
04131 Membrane trafficking [BR:
dcr04131
]
108223037
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dcr04147
]
108223037
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
108223037
Ribosome biogenesis [BR:
dcr03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
108223037
Membrane trafficking [BR:
dcr04131
]
SNARE
SNARE associated proteins
Others
108223037
Autophagy
Aggrephagy
Other aggrephagy associated proteins
108223037
Exosome [BR:
dcr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108223037
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_22
AAA_5
AAA_33
AAA_14
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
Mg_chelatase
AAA_28
AAA_18
Parvo_NS1
ATPase_2
IstB_IS21
ABC_tran
Viral_helicase1
AAA_7
Vps4_C
NB-ARC
AAA_24
TsaE
NACHT
Zeta_toxin
DUF815
Zot
Motif
Other DBs
NCBI-GeneID:
108223037
NCBI-ProteinID:
XP_017252574
UniProt:
A0A164YFQ6
LinkDB
All DBs
Position
5:27929214..27933691
Genome browser
AA seq
807 aa
AA seq
DB search
MSTQPESSDPKGTKRDFSTAILERKKAANRLVVDEAVNDDNSVVALHPETMEKLQLFRGD
TILIKGKKRKDTICIALADDTCDEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVH
ILPMDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCV
VAPDTEIFCEGEPLRREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLEKISKDTHGYVGADLAALCT
EAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFHTALGTSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSSGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRHSI
FKSCLRKSPVSKDVDLMALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKEKKRSEN
PEAMEEDDVEDEVSEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFS
ETSGTAAASSDPFAAPSGAADEDDLYS
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgagcactcaacctgaatcatctgatcccaagggaacgaagagagactttagtacggcg
attctggagaggaagaaggcggcgaatcgattagttgtagatgaggcggtgaatgatgat
aattccgtggtggcgcttcacccggagactatggagaagcttcagctctttcgcggtgac
acgattcttatcaagggtaagaaaagaaaagatacaatctgcattgccctagctgatgac
acttgtgatgagccaaagattagaatgaacaaagttgttagatctaacctgagggttaga
ctcggagatgtagtttctgtgcatcagtgtgctgatgttaagtatggaaagcgtgtacac
atccttcctatggatgatactatcgaaggagttacaggaaatctttttgatgcttatctg
aaaccctatttccttgaagcctatcgccctgttagaaagggtgatctattcctcgtgaga
ggaggcatgcgaagtgtggaatttaaggttattgagacagatcctgctgagtactgtgtt
gttgcccctgatactgaaatcttttgtgagggagagcctcttcgaagggaggatgaagat
aggttggacgaggttggatatgatgatgttggtggtgtccgtaagcagatggctcagatt
agggagttagtcgagcttccattaagacatccacagctctttaagtccatcggagtcaaa
ccaccaaagggaatcttgctctatggacctcctggatctggtaaaactttgatagcccga
gctgttgctaatgaaactggtgctttcttcttttgcattaatggaccagaaatcatgtca
aagttggctggggagagtgagagtaatctgaggaaggcatttgaagaagcagaaaagaat
gcaccatctattatattcattgatgagattgattcaattgcccctaaaagagagaagacc
catggtgaagttgagaggagaattgtttcccagctgttgacacttatggatggacttaaa
tctcgtgctcatgtaattgtaatgggtgctactaatcgtcctaatagtattgaccctgct
cttaggaggttcggcagattcgacagagaaatagatattggtgtacctgatgaagttgga
cggctagaggttctccgtatacatacaaagaacatgaagcttgctgaagatgttgatttg
gaaaaaatttcaaaggatacacatggatatgttggtgcagatttagcagctctgtgtact
gaggctgcacttcagtgcatcagggagaagatggatgttatcgacttggaagatgaaaca
atcgatgcagagatattgaactcaatggctgttaccaatgagcacttccacactgctctt
ggaacgagcaacccctctgcgttgcgtgaaacagttgttgaggtgcctaatgttagttgg
gaagatattggaggcttggagaatgtcaagagggaactgcaagagactgttcaatatcct
gtggagcatccagagaagtttgagaagtttggcatgtcgccctcaaagggagtcctattc
tatggaccacctggatgtggaaagaccttactggccaaggcaattgctaatgagtgccaa
gcaaactttattagtattaaaggacctgagttgcttaccatgtggtttggagaaagtgag
gcaaatgtgcgagaaatatttgataaggctcgtggatctgctccttgtgtcctgttcttt
gatgaactggactcaattgccactcagaggggaagcagttctggagatgctggtggagct
gctgatagggttttgaatcaactgttgactgaaatggatggcatgtcagccaagaagact
gttttcattattggggcaaccaacaggccggatatcattgaccctgcactcttgcgacct
gggcgtcttgaccagttaatttacattcccctccctgatgaggcgtctcgccattcaata
tttaagtcatgcctcaggaagtctcctgtttctaaagatgttgacctcatggcacttgcg
aagtacactcaaggattcagtggtgctgatataacagaaatatgtcaaagggcatgtaaa
tacgccattagggagaacattgagaaagacatcgagaaggagaagaagagaagtgagaat
cccgaggcaatggaggaagatgatgttgaggatgaggtctctgaaataaaggctgctcat
tttgaagaatcaatgaagtatgcacgccgaagtgtgagtgatgctgatatccgaaagtat
caggcatttgcccagacattgcagcagtctagagggtttggctctgagttccgattttct
gaaactagtggtactgcagcagccagctctgatccattcgcagctccttcaggggcagct
gatgaagatgacctatatagttag
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