Daucus carota (carrot): 108223059
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Entry
108223059 CDS
T05350
Name
(RefSeq) uncharacterized protein LOC108223059 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108223059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dcr03000
]
108223059
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108223059
04121 Ubiquitin system [BR:
dcr04121
]
108223059
Enzymes [BR:
dcr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108223059
Transcription factors [BR:
dcr03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
108223059
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108223059
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108223059
Ubiquitin system [BR:
dcr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108223059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
Nab2-like_zf-CCCH_
zf-UDP
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
108223059
NCBI-ProteinID:
XP_017252599
LinkDB
All DBs
Position
5:complement(40415239..40423744)
Genome browser
AA seq
1012 aa
AA seq
DB search
MSNEGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIINMAEKDNVEGRCPACRTPY
NKEKIVEKAAQCERLLSELNVEKKGKSKSKSKAPDGRKNLSSVRVIQRNLVYIVGLPLTL
ADEDLLQGAEYFAQYGKVLKVSISRTAAGTIQQFPNSTCSVYITYSKEEEAVRCIQSVHG
YTLEGRPLRACFGTTKYCHAWLRSVPCINPDCLYLHEIGTQEDSFTKDEIISAYTRNRVQ
LSVGATIDTQRRSGSVLPPPADDFCNDSCSSSGIHHNKSSTDNLDISSQNILESSVWQTP
ASSVRGSPPNSHSSKSVGLPAAASWGARASNSQPSPTSMASSNGPSKQKSDTGGISVAFS
TAVVSPAKVSLMHNTSGKKLNGEGWFPLQRNKSVPVASVGIQDVDKQQKSSNTSTKIGHF
DKLVTSDQISTPSPKVDGSTSMADITVQSCSINSERNSHLPVESKVKELCSDMLSLNIIT
HGPQHVDTKYRELLSTDAAAKDASSSKDPVAARDLSEFKLVSPSQVAESDTCKVKDDIQS
FNIQRRRDPEVTNSTDSSIGRLSDSFRDLHSQEAFRIPSTNFNLNNVDNQPSKFSVPQAY
NAPVISNGYAGNQTRSFDLDTSANDSSYMLQDELKLHDGRHGSALVNHDSILADGMGESS
IISNILSMDFDSWDESLASPQNLVKLLGETDKQLGSLGASNTKKVQNSNQSRFSFAREEH
QASNFGPSSAGVEQTLRNHSLTNGFKDNGNHYHSGTANGYSTLSAHQPGDFASTHFHNSP
NRFSVSRAPVTAPPGFSGPTRAPPPGFSSFERMEQTFDVNSGNHLLNNSSYLRNASQSPS
RMYNDSTNSDIEFIDPAILAVGKGRLPNGFNNPSLDMRSTYPTQMSNYENEARLQLMMQR
SVSPQQNPRYVEMGNSFSSYPDNYGMPPTIFEQALANNGSQYSQFGLSQSRNQLVSSGSW
DGWKEVQSGNGSTAAEFLRSERLGGNQYFSGRQDSKYRISSSGDLYNQTYGI
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacgagggagaaaagacttgccctctctgtgctgaagagatggatttgactgat
cagcagttgaagccatgcaagtgtggttatgagatttgtgtttggtgctggcatcacata
ataaacatggctgagaaagacaatgtagaaggcaggtgtccagcatgtcgaaccccttat
aacaaggaaaaaattgtggaaaaggcagctcagtgtgaaaggttgttgtctgagttgaat
gtggagaagaaagggaagtcaaagtcgaaaagtaaagcacctgatggtagaaagaaccta
agtagtgttcgagtgattcaacgaaatcttgtctacattgtggggttacctcttactttg
gcagatgaagacctcctacaaggagcggaatactttgctcaatatgggaaggtgcttaaa
gtgtcaatctctcgtacggcagctgggaccattcaacaatttccaaatagcacttgtagt
gtatatattacttattcaaaggaggaagaagcagttcgttgcattcagtcagtgcatggt
tacacattggagggtagaccattaagggcctgctttggaaccacaaaatattgccatgca
tggctgaggagtgtgccatgcatcaatcctgattgtctatacttgcatgaaattggtaca
caagaagatagtttcactaaagatgaaataatatcagcatacacaagaaatagagttcaa
ctgagtgtgggtgccacaatcgacacacaacgacgatctgggagtgtattaccaccacca
gcagacgacttctgtaatgacagctgctcctcatctggaatacatcataataaaagctca
acggataaccttgacatctcttctcaaaacatattggagtcatctgtctggcaaactccg
gcaagcagtgtgaggggctctccaccaaatagtcactctagtaaatctgttggtcttcct
gcagcagcatcttggggagcgcgtgcttcaaatagtcaaccatcaccaacaagcatggca
agctcaaatggaccttctaagcagaaatctgatacaggtggcatttcagtcgcattttca
actgcagtagtgagcccagccaaagtctccttaatgcataatacttcaggaaagaaactt
aatggagaaggttggtttcccttacagaggaataaatctgttccagtagcatctgtggga
atacaggatgtagataagcaacaaaagtcatcgaatacttccaccaagattggacatttt
gataaactagtgacaagtgaccagatatctacgccatcgccaaaagtagatgggtccaca
agcatggcagatatcacagtgcagtcttgcagtatcaattcagaaagaaattcacatcta
cctgtagagagtaaagttaaggaattatgttctgatatgttgtctctaaatataattact
catgggccacagcacgtagacacaaaatacagagaactcttgtcaacagatgctgcagca
aaggatgcatcctccagtaaggatcctgttgcagcaagggatctgtctgaatttaaatta
gtgtcgccgtcgcaagtagcagaaagtgatacttgtaaagttaaggatgatatccaatct
tttaatatacaaagacgcagggatcctgaagttaccaatagcacagatagtagtataggt
cggttatcagatagttttagggatctacattctcaagaggctttccgtatacccagcacc
aattttaatctaaataatgtagataatcaacctagcaagttttctgttccgcaagcatat
aatgccccagttatttcgaatggttatgctgggaaccagactagaagttttgatttggat
accagtgctaatgattcttcttatatgctacaagatgaactgaaattgcatgatggaaga
catggcagtgcgttagtaaaccacgatagtattttagcagacggaatgggagagagcagc
atcatatcaaatattttgtcaatggacttcgattcatgggatgaatctttggcttcaccc
cagaatttggttaagttactaggtgaaactgataaacagctgggttctcttggtgcatcg
aatacgaagaaagtacaaaacagcaatcagtctaggttctcttttgcaagagaggaacat
caagcatccaattttgggccatcatctgctggcgttgagcaaactctcaggaatcattct
cttacgaatggtttcaaggacaatggaaaccattatcacagtggtactgccaatggttat
tctactttgagtgcgcatcaacctggtgattttgcaagcacccattttcataattcaccg
aacaggttttctgtttctagagcacctgtaacagcccctcctggattttccgggcctacc
agagctccacctccaggcttttcctcttttgaaaggatggaacagacatttgacgtaaac
tctgggaatcatttgctcaacaattcatcttacttgagaaatgctagtcagtcaccttct
agaatgtataatgattccaccaattcagatatagagtttattgatcctgcaatattggca
gtaggtaaaggcagacttcctaatgggtttaataaccctagtttagacatgaggtcaact
tatcctacccagatgagtaattatgagaatgaggcaagattgcagctaatgatgcaaaga
tctgtttcaccacagcagaaccccagatatgtcgaaatgggtaacagtttttcttcttat
ccggataattatggaatgcctccaacgatttttgagcaggctttggcaaacaatggatcc
cagtattctcaatttggtctttcacagtccagaaatcaacttgtgtcgagcggtagttgg
gatggttggaaagaggttcagagtggaaatggctcaactgcggcagagtttcttagatcg
gagagattgggaggaaatcagtactttagtggtcgccaggattcgaagtaccggatttcc
agttctggagatttatataatcaaacatatgggatttga
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