Daucus carota (carrot): 108223073
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Entry
108223073 CDS
T05350
Name
(RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03015
mRNA surveillance pathway
dcr04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108223073
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
108223073
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
dcr01009
]
108223073
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108223073
03036 Chromosome and associated proteins [BR:
dcr03036
]
108223073
Protein phosphatases and associated proteins [BR:
dcr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
108223073
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
108223073
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
108223073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
ANAPC4_WD40
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_2nd
Motif
Other DBs
NCBI-GeneID:
108223073
NCBI-ProteinID:
XP_017252624
LinkDB
All DBs
Position
5:979419..987600
Genome browser
AA seq
507 aa
AA seq
DB search
MQGDQANATAAAAAAPPSSLDWKFSQVFGGHGAGEQAKEGDIISAIEFNKSGHHLAAGDS
GGRVVIFERSNTTAHVGSRRDAERIDYSNSRHPEFRYMTEFKSHEPEMDYLTSKEYDEEI
NKVRWWQSANGALFLLSTNDKTIKFWKVREKKAKKILQMDPDSESSLNESFSRSTLSSGG
LSNGGSSDVSSDPKSHTGCSFPPGGVASIRLPVVSRNESSLMATCRRVYGRAHVYRINSI
SCNSDGETFISADDLRINLWNVETNRQSFNIVDLKPEKAEDLDELITSAEFHPTHCNTLA
YSSSKGLIRLVDLRQSALCDKHFKLFEEPEAPGSKSYFRDVIASISDIKFRKDGRYLLSR
DYMTLKLWDINMDCGPVSTFQVHEYIRPDLFYLYQNDYLTDQFQCCLSGNGQRVATGSYS
LFRVFGTAEGSTEATFVEASKNPMRRRGQTPSRPSRSPVVRRGAQSRVLEADEDSINYNA
KLQHLAWHPSENIIACSGADSLFMFYA
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggtgatcaagcaaacgccacagcagcagcggcagcagctccgccgagctcgctg
gactggaagttctctcaggtgttcggtggacacggtgccggcgaacaagctaaagaaggt
gatatcatatcggcaattgagttcaataaatctggtcaccatctggctgctggggactct
ggtggtcgagtggtcatatttgaaaggagtaacacaacagcgcatgttggaagtcgaagg
gatgcagagaggattgattattcaaatagcaggcatccagaatttcgttacatgactgag
tttaagagtcatgaacccgagatggattatcttacgagcaaggaatatgatgaagagata
aataaagttagatggtggcaatcagccaacggggccttatttcttttgtcaaccaatgac
aaaacgataaaattttggaaggttcgagaaaaaaaagccaagaagattttgcagatggac
ccagattctgaaagttccttgaatgaaagtttctctaggtcaactctttcttcaggcggt
ctatcaaatggagggtcttccgacgtatcatctgatccaaagtcacacactggttgttca
tttccgcctggaggagttgcatccatacgtttgcctgtggtaagccgcaatgagagtagt
cttatggcaacctgtagacgagtttatggccgtgcgcatgtctatcgtatcaattccatt
tcatgtaacagtgatggagaaacctttatttcagcggatgacttgagaataaacctctgg
aatgtggaaacaaatcgtcaaagttttaatattgttgatctgaagcctgaaaaagcagag
gatcttgatgagttgattacatcagcagaatttcatcctacccattgtaacacactagct
tatagtagttcaaaaggattaattcgtctggttgatttgcgacaatctgctttgtgtgac
aaacatttcaaactgtttgaggaaccggaggcacctggctcaaaatcatactttagggat
gtaattgcctccatctctgatatcaagtttaggaaggacgggagatatttactcagtcgg
gactacatgacactaaagttatgggatattaatatggattgtggaccagtctcgaccttc
caggttcatgagtatataaggccagacttattttatttatatcaaaatgattacctcacg
gatcaatttcagtgttgcttaagtggtaatggtcagcgggttgcgactggttcttacagt
ttatttcgcgtgtttggaactgctgagggtagtacagaagcaacctttgtggaagctagc
aaaaatccgatgaggcgacgaggtcaaacgccatcgaggccttctagatcccctgttgtt
agaagaggggctcaaagccgagttttagaagccgacgaagactccatcaattacaatgcg
aagctacagcacctggcatggcacccaagtgaaaatatcattgcttgttctggtgcagac
agcttgttcatgttttatgcataa
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