Daucus carota (carrot): 108223107
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Entry
108223107 CDS
T05350
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03030
DNA replication
dcr03410
Base excision repair
dcr03420
Nucleotide excision repair
dcr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108223107
03410 Base excision repair
108223107
03420 Nucleotide excision repair
108223107
03430 Mismatch repair
108223107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dcr03032
]
108223107
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108223107
DNA replication proteins [BR:
dcr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
108223107
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
108223107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
RCF1-5-like_lid
AAA_22
PTCB-BRCT
AAA_30
AAA_19
Rad17
AAA_assoc_2
AAA_18
AAA_5
BRCT_2
nSTAND3
AAA_24
Sigma54_activ_2
DNAX_ATPase_lid
AAA_28
RuvB_N
AAA_16
RsgA_GTPase
AAA_33
Gp44_lid
AAA_14
Zeta_toxin
Motif
Other DBs
NCBI-GeneID:
108223107
NCBI-ProteinID:
XP_017252680
UniProt:
A0AAF0X4I8
LinkDB
All DBs
Position
5:complement(32879463..32889557)
Genome browser
AA seq
995 aa
AA seq
DB search
MSSDIRKWFMKHNDNKGNGNASKDKLENPEKPDKQEKSGREGQESSGRRKCSPYFDKQKI
KNEKEIEEPKSETKTPIRKKLQKVEDAEDDDDFEMPSSKRKGLVEVTPNKRSKSGVGRGA
AKKGIDLDESDEDDVKVKATKSTPKSAGRGRGGKAVSVATKDESDDDDAEDKDTKSQKPG
GRGRGGRGTSAAAPGGGRGRGGGGGGRGGFMNFGERKDPPHKGEKEVPEGAPNCLANLTF
VISGTLDSLEREEAEDLIKRHGGRITGSVSKKTNYLLCDEDIGGRKSSKAKELGTGFLTE
DGLFDMIRASKPSPATAQNETKKSIEKTVASTPKSSPQQLAISKEQARISPVKNSINKGR
GQSASPAKKKSQSTEHPSLSWTEKYKPKVPTDIIGNQSLVKQLHEWLVQWNEQFLNTGHK
GKGKKPINAGAKKAVLLSGTPGIGKTTSAKLVSQMLGYVTVEVNASDSRGKADGKIEKGI
GGSTANSIKELVSNEALSVKMDRPKHQKTVLVMDEVDGMSAGDRGGVADLIASIKISKIP
IICICNDRYSQKLKSLVNHCLLLNYRKPTKQQMAKRLAQIANAEGLKADEIALEELAERV
NGDMRMALNQLQYMSLSKSVIKYDDIRQRLLSSSKDEDISPFTAVDKLFGFNAGKLGIDE
RVNLSMSDPDLVPLIIQENYVNYKPSSAGRDDNGLKRMSLIARAAESIADGDIINVQIRR
YRQWQLSQSSSLSSCIIPAALLHGQREILEQGERNFNRFGGWLGRNSTMGKNYRLLDDLH
VHLLAARESNLGRTTLRLDYLTLLLKNLTDPLRMLPKDEAVEKVVEFMDSYSISQEDFDA
IVEISKFQGHPNPLEGILPAVKAALTKAYNKGSKSRVIRTADLITLPGLKKAPKKRIAAM
LEPADDGLEGKADEAENEEGNSSDEELDDKNDGGKAVQLDLQNLSSKGIQVQMDLKGAEK
TSGKKTGSGRGKRGASEVVEKGAGRGSGSAAKRKK
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagatattaggaagtggttcatgaagcataatgataacaagggtaatggcaat
gccagtaaagataaactcgaaaaccccgagaagcccgacaagcaagaaaaatctgggcgc
gaaggtcaagaaagttcgggtagaaggaaatgtagcccgtattttgataaacaaaagatt
aaaaatgagaaggaaatcgaggaacctaaaagtgaaacgaaaaccccaattaggaagaag
cttcagaaagttgaggatgctgaagatgatgatgattttgagatgcctagttcgaaaaga
aaaggtttagttgaagtgacacccaacaagagatcaaagagtggagtgggtagaggagct
gcaaagaagggtattgatcttgatgaaagtgacgaggatgatgtgaaggttaaagcgacg
aaatctactccgaaatcagctggtaggggccgtggtgggaaggccgtctcagtagccact
aaagatgaaagtgatgacgacgatgctgaagacaaagatacaaagtctcaaaagcccgga
ggacgaggtcgtggtggtagaggtacatcagctgcggcaccaggtggtggaagaggcaga
ggaggaggtggtggtggacgtgggggtttcatgaattttggcgaaagaaaggatcccccg
cacaagggagaaaaggaagtccctgaaggagctccaaattgtttggctaatttgactttt
gtaattagtggaacccttgacagtctggaaagggaagaagctgaagatctaattaaaaga
catggtggtcgcataactggatccgtcagcaagaagacgaattatctcttgtgtgatgaa
gatatcgggggacggaaatccagtaaagcaaaagagctaggcactggctttcttactgaa
gacgggttatttgatatgatccgtgcatcaaagccatctccggccactgcccaaaatgaa
acaaagaaatctattgaaaagacagtcgcatccactccaaagagcagtccgcaacaattg
gcaatcagcaaagagcaagccaggatttccccagtcaagaactcaattaataaaggtagg
ggccagagtgcctctccagccaagaaaaaatctcaaagtactgagcatccttcattgtca
tggacagaaaagtataaaccaaaggtcccgactgacatcatagggaatcaatcactagtt
aagcagctgcatgagtggctggttcaatggaacgagcagttcttaaataccgggcacaaa
ggaaaaggtaaaaaacctattaatgctggtgctaaaaaagctgtactactgagtggtaca
cctggcataggaaagactacatcggcgaagttagtaagtcagatgcttggttatgtaaca
gttgaggtaaatgctagtgacagtcgaggaaaggctgatggaaaaattgaaaaaggaatt
ggtggaagtactgcaaattctattaaggaactagtcagtaatgaagccctgagtgttaaa
atggatcgcccgaagcatcagaagacggttctggttatggacgaggttgatggaatgtct
gctggagatagaggtggagtggcagatcttattgctagtattaagatctcaaaaattccg
attatttgcatatgcaatgacagatacagtcaaaaactgaagagtcttgtgaatcattgc
ctgcttcttaactaccgtaaacctacaaagcagcagatggcaaagaggttggcgcaaatt
gcaaatgcagaaggtcttaaggctgatgagattgcgctggaggaacttgcagaaagggtc
aacggagatatgcgcatggctctgaaccagttgcaatacatgagtctttcgaagtccgtc
attaaatatgatgacataagacagcgactactgagcagttcaaaagatgaagatatatca
cctttcacagcagttgacaagctgtttggatttaatgctgggaagttggggattgatgaa
agggttaatctaagcatgagtgatcctgatcttgtccctcttataattcaggaaaattat
gttaattataaaccaagttcggctggcagagatgacaatgggctgaaaagaatgagcttg
atcgctcgtgctgcggaatctattgcagatggtgatataattaatgtgcagattcggaga
tatcgacagtggcaactctctcagagtagctctctgtcatcctgtataatacccgctgct
ttattgcatggccagagggagatacttgaacagggtgaacgcaattttaatagatttggc
gggtggttgggaaggaactccacaatgggcaaaaattacaggctattggatgatctgcat
gttcatctacttgctgctcgtgaatctaatttggggaggactaccttgcgacttgactat
cttactcttcttctgaagaacttaactgatccacttcggatgcttcccaaggatgaagct
gttgagaaagttgtggaattcatggactcttactctattagccaagaagactttgatgct
attgtcgagatatcaaaattccaggggcacccaaatcctttagagggcattctgccggcc
gtgaaagctgccctaaccaaggcatacaacaaaggaagcaagtcacgagtaatccgtaca
gcagatctgattacacttcctggattgaagaaggctcctaagaagcgtattgctgcaatg
ctggaaccagcagatgatggcttggagggtaaagctgatgaggcagaaaatgaggaagga
aattcttccgacgaggaattggatgacaaaaatgatggcggtaaagcagtgcagttggat
ctccaaaatcttagttcgaagggaatccaagtacagatggacttaaagggtgcagaaaaa
acaagtggcaagaagacaggttcaggcaggggaaaaagaggggcttctgaagtagtagaa
aaaggtgccgggcgtggttctgggtctgctgccaaaagaaaaaaatga
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