Daucus carota (carrot): 108223183
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Entry
108223183 CDS
T05350
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1
KO
K14485
transport inhibitor response 1
Organism
dcr
Daucus carota (carrot)
Pathway
dcr04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
108223183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dcr04121
]
108223183
Ubiquitin system [BR:
dcr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
108223183
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
F-box-like
LRR_NXF1-5
F-box
LRR_8
Motif
Other DBs
NCBI-GeneID:
108223183
NCBI-ProteinID:
XP_017252792
UniProt:
A0A161XTS1
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Position
5:complement(34135282..34138790)
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AA seq
583 aa
AA seq
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MAYSFPEEVLEYVFSFINSDKDRNAVSLVCKSWYEIERWCRRRIFIGNCYAVTPGIMVRR
FPEIRSVEIKGKPHFADFNLVPEGWGGYVYPWVVAMSRAYPWLEEIRLKRMVVSDECLEL
ISKSFKNFKVLVMSSCEGFSTDGLASIVANCRNLKELDLRESEVEDLSGHWLSHFPDTCT
SLVSLNIACLASEVSFSALERLVSRCPNLKSLQLNRAVPLEKLPNLLRGAPQLVELGTGA
YSAELRPELLSNLFDAFTVCKELKGLSGFWDVVPAYLPAIYPVCNGLTSLNLSYATIQSP
DISKLISQCQNLERLWVLDYIEDSGLDILATCCKNLEELRVFPSDPYGVEQNVALTEQGL
VSVSEGCPKLQSVLYFCRRMSNAALVTIARNRPNLIRFRLCIIEARATDYLTLEPLDAGF
GAIVENCRELRRLSLSGLLTDRVFEYIGKHAKKLEMLSIAFAGDGDLGLHHVLSGCESLR
KLEIRDSPFGDKALLANAAKLETMRSLWMSSCSVSYGACKLLGQRLPRLNVEVIDERGTP
ESRPESCPIEKLYIYRTVAGPRFDTPGFIWTMDEEGNTPLGIA
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggcgtactcatttccagaagaagtgttggagtatgtgttttcgtttataaattctgat
aaggatcgaaacgcggtgtcgctggtgtgtaaatcgtggtacgagattgaacggtggtgt
cgtcggaggatttttattgggaattgttatgcggtgactccggggataatggtgaggaga
tttccggagattagatcggtggagattaaggggaagccgcattttgcggattttaatttg
gtgccggaaggttggggagggtatgtttatccgtgggtggttgcgatgtcgagggcgtat
ccgtggttggaggagattaggttgaagaggatggttgtgagtgatgagtgtttggagctg
atttccaagagtttcaagaattttaaggttctggttatgtcgtcttgtgaggggttctct
actgatgggcttgcgtctattgtggctaattgcaggaatttgaaagaattggacttgcgt
gagagtgaagtggaagacttgagtggacattggctaagccattttcctgacacttgcaca
tcattggtttcactaaacatagcttgtttagcttctgaggtaagtttctcggccttagag
aggcttgtttctaggtgtcctaacctaaaatcgcttcagctcaaccgtgccgttcctctc
gagaagctaccgaaccttctccgcggggcccctcaactagttgagctaggtacaggtgcc
tattcagcggaactccgaccagagttattatccaacttatttgatgcctttacagtttgc
aaggagcttaagggcttgtctgggttttgggatgtagtaccagcatatcttccagctatt
tatccagtctgcaatggtctcacatctttgaacttaagctatgctactatccagagtcct
gatattagtaagcttattagccagtgtcagaatttggagcggttatgggtgttggattac
attgaagacagcggccttgatatccttgctacttgttgtaaaaatctggaagaattgagg
gttttcccctctgacccatacggtgtggaacagaatgtggctttgacagagcagggactt
gtctctgtttctgaaggctgtcccaagctccagtcagttctatatttctgccgccgaatg
tctaatgctgcattggttacgattgctcggaatcgtccaaacctaatccgtttccgtttg
tgcatcattgaggctcgtgctactgattacctaactcttgaaccacttgatgctggtttt
ggggccattgtagagaactgcagagaattacgaaggttgtccctatcaggacttctcact
gatcgtgtgtttgagtacattggcaagcatgcaaagaagttagagatgctctctatagct
tttgctggtgatggtgatttaggcctccatcatgtattgtctggttgtgaaagccttcgg
aagcttgagattagggactctccttttggagataaggctctgttggccaatgctgcaaag
ctggagacaatgcgatccctttggatgtcttcttgctcggtaagttatggagcatgcaag
ctgctaggacagaggttaccaaggctcaatgttgaagtaatcgatgagagagggacccca
gagtcgagacctgaaagctgtcctattgaaaagctctatatataccggacagttgctggg
ccaagatttgacacgcctggttttatatggaccatggatgaagaaggcaatacaccattg
gggattgcatga
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