Daucus carota (carrot): 108223199
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Entry
108223199 CDS
T05350
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108223199
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcr03021
]
108223199
03041 Spliceosome [BR:
dcr03041
]
108223199
03036 Chromosome and associated proteins [BR:
dcr03036
]
108223199
Transcription machinery [BR:
dcr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
108223199
Spliceosome [BR:
dcr03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
108223199
Complex B
108223199
Complex C
U2 SnRNP specific factors
108223199
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
108223199
TFTC complex
108223199
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Beta-prop_EML_2
Motif
Other DBs
NCBI-GeneID:
108223199
NCBI-ProteinID:
XP_017252816
UniProt:
A0A162A616
LinkDB
All DBs
Position
5:complement(42240276..42246022)
Genome browser
AA seq
1211 aa
AA seq
DB search
MYLYNLTLQQATGIVCAINGSFSGGKSQEIVVARGKVLDLLRPDDNGKIQTILSVEVFGA
IRSLAHFRLTGAHKDYIVVGSDSGRIVILDYNKEKNVFDKIHQETFGKSGCRRIVPGQYL
GIDPKGRAVMVGACEKQKLVYVLNRDTSARLTISSPLEAHKSHTIVYSIVGVDCGFDNPV
FAAIELDYSEADQDSTGQAASEAQKHLTFYELDLGLNHVSRKWSEQVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAAMHKQKSMFFFLLQ
TEYGDVFKVTLDHDNDRVSELKIKYFDTIPVSSSLCVLKLGFLFAASEFGNHGLYQFQAI
GDDPDVESSSATLMETEEGFQPVFFQPRGLKNLVRIDQVESLMPIMDMKVSNLFEEETPQ
IFSLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFTNAT
LVLSIGETVEEVSDSGFLDTTPSLDVSLIGDDSLMQVHPTGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVVALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQILSLQSLSSPPDSLLFLEVQASIGGEDGADHPASLFL
NTGLQSGVLFRIVVDMVTGQLSDARSRFLGLRAPKLFSVAVRGRRAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEYAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNEMTIPLRYTP
RKFVLQPKRKLLVIIESDQGSFAAEEREASRKECFEAAGMGENGKKEMENGGDDEDKDDP
LSDEQYGYPKAESDKWVSCIRVLDPRTTETTCLLELQDNEAAFSICTVNFHDKEYGTLLA
VGTAKGLQFWPKRSFSAAYIHIYRFMKDGRSLELLHKTQVDGVPLALSQFQGRLLAGIGP
VLRLYDLGKRRLLRKCENKLFPNTINSIHTYRDRIYVGDVQESFHYCKYRRDENQLYIFA
DDSVPRWLTASYHIDFDTMAGGDKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGA
PNKVEEIVQFHVGDVVTCLQKASLIPGGQESLIYGTVMGSLGALLAFSSRDDVDFFNHLE
MHMRQEHPPLCGRDHMAYRSAYFPVKDVVDGDLCEQFPTLPMDLQRKIADELDRTPGEIL
KKLEEIRNKIV
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgtacttatacaatctgactctccagcaagctacaggcattgtgtgcgcaatcaatggc
agcttcagtggtggaaaatcccaagaaattgtggtggctcgtggcaaggttctcgatctt
ttgaggcctgatgataatggtaagattcaaaccattctttctgtcgaagttttcggtgct
attcgctctttagctcactttcgattaacgggtgctcataaagattacattgttgttggt
tctgattccggtagaattgtaattcttgactataataaagagaagaatgtgtttgataaa
attcatcaagagacgtttggaaagtcggggtgtaggaggattgttccggggcagtatttg
gggattgatcctaaggggagggcggttatggttggggcgtgtgagaagcagaagcttgtt
tatgtgttgaatagggatacatcggctaggttgactatttcgtcgcctttggaggcgcat
aagtcgcatacgattgtgtattcgatcgtgggggtggattgtgggtttgataatccggtg
tttgcggcgattgagttggattattcggaggcggatcaggattcgacggggcaggcagcg
agtgaggcgcagaagcatttgacgttttatgagttggatttggggctgaatcatgtgtcg
aggaagtggtcggagcaggttgataatggggcgaatatgcttgttactgtgccggggggt
ggagatgggcctagtggcgtgcttgtttgtgcggagaactttgtgatttataaaaatcag
gggcatccggatgtgcgagctgtgattcctagacgggcagatttgccggctgaacgtggg
gttttgattgtttctgctgctatgcacaaacaaaagtccatgttcttctttctgttgcaa
actgagtatggtgatgtctttaaggttacacttgaccatgataatgatcgtgtttctgag
ctgaagattaagtattttgatacgatcccagttagttcttctttgtgtgtgctgaaactt
ggatttctctttgctgcatccgagtttggaaatcatggtctgtatcagttccaggccatt
ggagatgatcctgatgtggaatcttcatctgctacattaatggaaacagaagaaggtttt
caacctgtttttttccagcccagaggactgaagaacctggtgaggatcgatcaggtggag
agcttgatgccaataatggacatgaaagtatcaaatctttttgaggaagaaactcctcag
atattttcactttgcgggcgtggtcctcgttcttcactacggatactaagacccggtttg
gcaattagcgaaatggccgtctcccagcttcctggtgttcctagtgcagtttggaccgtg
aaaaagaatgtaaatgatgagtttgatgcttatattgttgtttcatttactaatgccact
cttgtcctttctattggtgagacggttgaagaagtcagtgatagtgggtttctcgacact
accccttcccttgatgtatctctgattggtgatgattcgctcatgcaagttcatccaact
ggtatcaggcacataagggaagatggacgtataaatgagtggagaactcctggaaaaaga
accattgttaaggtggggtctaacaggcttcaggttgttgttgcattgagtggaggagaa
cttatatactttgaggtggatatgactggccaattgatggaggtcgagaagcatgaaatg
tctggggatgtagcttgtttggacattgcacctgtacctgaaggaagacaaagatctcgc
ttcctagcagtaggatcatatgacaacactattcgtatcttatcattagatcctgatgac
tgcatgcaaattctgagcctccaaagtctgtcatcacccccagattctctcctttttctt
gaagttcaggcatctataggtggtgaggatggtgcagaccaccctgccagcctctttcta
aatacaggtttgcaaagtggtgttttgtttagaatagtggttgatatggtgacaggtcag
ctttcagatgctcgatctcgtttcttaggacttcgagctccaaagctcttttctgttgct
gtgagaggacgccgtgctatgctctgtttgtcaagtagaccttggcttggttatatccac
caagggcatttcttactcactcccctctcctatgagacccttgaatatgcagcatcattc
tcgtctgatcagtgtgccgaaggtgttgttgctgttgctggagatgcattgagagttttt
accatagagagattgggtgaaacttttaatgaaatgacaattcctttaaggtacacacca
agaaaatttgtgcttcagcctaagaggaaacttttggtaataatagagagtgatcaggga
tcatttgctgcagaagaacgtgaagcttcaagaaaggagtgctttgaggctgctggtatg
ggtgagaatggtaaaaaggagatggagaatggtggtgatgatgaggataaagatgatccc
ctctctgatgagcagtatggttatcctaaagcagagtcagataaatgggtttcttgtata
agagtccttgatccaaggacaactgaaacaacttgtctgttggagctccaggataatgaa
gctgccttcagtatatgcacagtaaatttccatgataaagagtatggaactcttttagct
gttggcacagctaaaggtttgcaattttggcccaagagatctttctctgctgcatatatt
catatctatcggtttatgaaagatgggagatcccttgaacttttgcataagacacaagtg
gatggtgtacctcttgcattgtcccagtttcaaggaagattactagctggaatagggcca
gttctgagattgtatgatttggggaaacggagattgcttagaaaatgtgagaataaattg
ttccccaacacaattaactctattcatacgtaccgtgaccgaatttatgtcggtgatgta
caggagtcgttccattattgcaaatataggcgtgatgaaaatcagctgtatatatttgct
gatgattctgtcccgagatggcttactgcatcataccatatagattttgacacaatggca
ggtggagacaagtttgggaacatctattttgttcgactaccacaagatgtttctgatgag
attgaagaagatccaactggcggaaagataaaatgggagcagggtaagctgaatggtgcc
ccaaacaaagttgaagaaatagtgcaatttcatgtcggggatgtcgttacatgcttgcag
aaagcatctcttattcctggaggtcaggagtctcttatatatggaactgtgatgggaagc
ttaggggcattacttgctttcagttcaagagatgatgttgactttttcaatcacttggag
atgcatatgagacaggaacatccacctttatgtggaagagatcacatggcttatagatct
gcatatttccctgttaaggatgtggttgatggagatctgtgcgagcagttcccaactttg
ccgatggatctgcagcggaaaattgcagatgaattagataggactccgggagagatcctg
aaaaaacttgaagaaatccgcaataaaattgtctga
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integrated database retrieval system
