Daucus carota (carrot): 108223200
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Entry
108223200 CDS
T05350
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 5
KO
K05391
cyclic nucleotide gated channel, plant
Organism
dcr
Daucus carota (carrot)
Pathway
dcr04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
108223200
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
dcr04040
]
108223200
Ion channels [BR:
dcr04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
108223200
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GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Ion_trans_2
IQ
Motif
Other DBs
NCBI-GeneID:
108223200
NCBI-ProteinID:
XP_017252817
UniProt:
A0AAF0X9F1
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Position
5:complement(44149577..44159334)
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AA seq
736 aa
AA seq
DB search
MFDCGPKSKSDYLGGQRERFVRLDELDSRSSSPSAAIEMNKCGFSIEGLGRPSHATNDPS
KSYKQGMQKGSEGLMSIGRSLGFGVSRAVFPEDLKVSEKKIFDPQDKFLLSWNKFFVISC
IIAVSIDPLFFYLPVYSRVPKCLGIDRKLAIVATTLRTVVDVFYLIHMALQFRTAYIAPS
SRVFGRGELVIDSAKIAKRYLLSHFIIDFLAVLPIPQIVVWRFLQNSNGSDVSATKQALL
VIVLLQYIPRLLRFIPLTSELKRTEGVFAETAWAGAVYYLLLYMLASHIVGAFWYWLSVD
RYNTCWDKACRSSKGCITDFLYCGNENLSGYDGWKSVSDSVLDLKCGVDGEKNPFDFGIF
KQALSSGIVYSRKFISKYCYCLWWGLQNLSTLGQGLQTSTFPGESIFSIALAIFGLILFA
LLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPPDLRERVRRYDQYKWLETRGVDE
ENIVHGLPKDLRRDIKRHLCLALVKRVPLFEKMDERLLDAICERLKPCLYTENTYIVREG
DPVDEMLFIIRGRLKSVTTDGGRSGFFNESLLKEGDFCGEELLTWALDPKSGVNLPSSTR
TVRALTEVEAFALTAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYS
KRKILELRRKEEEAEALAGASRNVGGGSYSLGATFLASRFAANALRGVHRNRNLKSAREL
VKLQKPPEPDFSADAD
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgttcgattgtgggcccaagtccaagtccgattatcttggtggccagcgggagaggttt
gtgaggctggatgaattggattcccgatcatcatcaccatctgctgcaattgaaatgaat
aaatgtgggtttagcattgagggcttgggtcgtcccagccatgcaactaatgacccatct
aaatcatataagcaaggaatgcagaaaggatccgaaggactgatgtctattggccgttct
cttggattcggtgtttctcgagcagtgtttccggaagatcttaaagtctcagagaagaag
atatttgacccccaagataaattccttttatcatggaataagttctttgtcatttcatgt
atcatagcggtctctatagatccattgttcttctatcttccagtttatagcagagtgcca
aaatgtttggggattgataggaagctagctatcgttgctacaacacttcgtactgttgtt
gacgtattctatcttattcacatggcccttcagttccgaacagcctatatagctccatca
tctagggtcttcggacgaggggaacttgtgatagattctgcaaaaatagccaagcggtac
ttgctgagccattttatcatcgattttctggcagtgcttcccataccacagatagttgtg
tggagatttctgcagaactcaaatggttctgatgtatcggctacaaagcaagccttactg
gttatcgtcttgctccagtatatacctaggttgctgcgtttcataccgttaacttcagaa
cttaaaaggactgagggtgtgtttgctgaaacagcatgggctggtgctgtgtactatctg
ctattgtacatgctcgccagtcatatcgttggagctttttggtattggttatcggtagac
cgttataatacatgctgggataaagcttgtagaagtagtaaaggctgcataacagatttc
ctgtattgtggcaatgaaaatttgagtggttatgatggctggaaaagtgtcagtgattct
gttctagatttaaagtgcggagtggatggtgaaaaaaacccatttgattttgggatattc
aagcaggctttatcatctggtatcgtttattccaggaagttcatctccaagtactgttat
tgtttgtggtgggggttgcaaaatttaagtacacttggacagggacttcaaacaagcact
ttcccaggagaatccatattttccattgcactagccatttttggtctaattctctttgca
ctgttgattggcaacatgcagacataccttcagtcgctaacaattcggctggaggagatg
agggttaaaaggcgtgactcagagcagtggatgcatcaccgtttgcttccgccagatctc
cgggaacgtgttagacgctatgaccaatacaagtggttagaaacacgtggagttgatgaa
gagaatatagttcacggtcttccgaaggatctcagaagagacataaagcggcatctttgt
ctagctttagtgaagagggttcctctatttgaaaagatggatgagaggttacttgatgca
atttgtgagcggctgaaaccatgtctgtataccgaaaatacttacatagttcgagaagga
gatccagttgatgagatgctcttcatcatacgtgggcgccttaaaagtgtaaccactgat
ggtggaagaagtgggtttttcaatgagagtttgctgaaagaaggggacttttgcggagaa
gagcttctaacatgggcacttgacccaaaatctggtgtcaacctaccctcatctactcgt
acagtaagggcattgacagaggtggaagcttttgctctaacagccgaagagttaaaattt
gttgccagtcagttcaggcgtcttcacagcagacaggttcaacacactttccgcttctac
tcacagcagtggagaacctgggctgcttgcttcatccaagctgcctggcgccgatattcc
aaaagaaaaattcttgaacttcggcggaaggaagaagaagcagaagcattagctggagcc
agcaggaatgttggtggaggttcttatagccttggtgccaccttcttagcttctagattt
gcagcgaacgctcttcgtggggtgcaccggaataggaatctcaagagtgcaagagaactg
gtgaaactacaaaagcccccggaacctgatttctctgctgatgcagattaa
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