Daucus carota (carrot): 108223307
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Entry
108223307 CDS
T05350
Name
(RefSeq) THO complex subunit 5B isoform X1
KO
K13174
THO complex subunit 5
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03013
Nucleocytoplasmic transport
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108223307
09122 Translation
03013 Nucleocytoplasmic transport
108223307
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108223307
03041 Spliceosome [BR:
dcr03041
]
108223307
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
108223307
Spliceosome [BR:
dcr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108223307
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
108223307
NCBI-ProteinID:
XP_017252975
UniProt:
A0A164ZPE9
LinkDB
All DBs
Position
5
Genome browser
AA seq
810 aa
AA seq
DB search
MDVTMAEPGEILPERKIDYSVYDHLQTSKSSIESIIAKMLSIKKDGLSKSQLGELVTQMS
LHFVSLRQANRSILIQEDHVKQETEHAKAPVDFTTLQLQNLMYEKNHYVKAIKACKDFKS
KYPDIELVPEEEFFRDAPEDIKNSVISKDSAQNLMMKRLNFELLQRKELCKLTEKLEQQK
KNLLETIANRKKFLSSLPSHLKSLKKASLPVQHQLGVLHTKKTKQKQLAELLPPPLYVLY
SQLVAQKDAFGENIDLEIVGSVKDAQTFARQQANKDTGISTSQDNSKVEDDAPDDEDDGQ
RRRKRPKKVPAKESLDPAGIYQAHPLKTVLHIYDDEVSDSKSKLITLKFEYLLKLNVICV
GIEGSNDGPEHNILCNLFPDDPGFELPHESAKLRVGKTVVFDEKRISRPYKWAQHLGGID
FLPEVSPLSSGSYAPVSEAAKHSATTSGLSVYRQQNRVETVLQRIRDRKKAQLALAEQLH
LLMELKWPTVTCNSVPWAVHAPLCTLCSWVHVGSLPSSVAPLTVGETEQVKIPPETEIAQ
KPDTSKEEVENAREDGELPSLVAPPISDIDVKRTSTKGSDYDHSKQLALISKSVASPISK
GKSLSFKKNDEDVDLLMLDSGSDLDEQAIEPETESVPTAGGDEIVDYSWVERGVQEYCFV
LNRKADVGDKNMKLEAKVKIFMEYPLRPPLFTLTLSVTSIGGASHNDTGNSDWYNELRAM
EAEVNAHIMKMIPSTEENYILGHQICFLAMLFDFYMEEEAGCDKKKRTSVVDIGLSRPVN
GGLVSRTYRGRDHRKMISWKSNGCTSGYPC
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgacaatggcggagccaggcgagatattaccggagcgcaagatagactactca
gtctacgatcatctacaaaccagcaagtcatcaatcgaatcaatcatcgctaaaatgctc
tcaattaaaaaagacggcctctccaaatctcaactcggtgaacttgtcactcagatgtca
ctccattttgtctctctccgccaggcaaatcgttccattttgattcaagaagatcatgta
aaacaagagacagagcatgcaaaggcacctgttgacttcacgaccctgcaactacagaat
ttgatgtatgagaagaatcattatgtcaaggctattaaggcttgcaaagactttaagtct
aaatatcctgatatcgaacttgtgccagaggaagaatttttcagagatgctcctgaagat
attaagaactctgtaatatcaaaagacagtgcccaaaatctgatgatgaagagactcaac
tttgagctacttcagcgcaaggaattgtgcaaacttaccgagaaactggagcagcaaaag
aagaatcttcttgaaactatcgccaatcgaaagaaatttttgtcaagccttccgtcacat
ctcaagtcgcttaaaaaagcatcattgccagtgcagcaccaacttggagttcttcataca
aagaaaaccaagcagaagcagttggcagagttgcttccacccccgctatatgtactgtat
tcgcagttagtggcacaaaaggatgcttttggggaaaatatcgaccttgagattgttgga
agcgtgaaggatgctcagacttttgcccgccagcaagcaaataaagacaccggcatatcc
acctctcaagataattccaaagtggaggatgatgctcctgatgacgaagatgatggccag
aggaggaggaagcgaccgaagaaagttccagccaaggaaagtctagatccggccggaata
tatcaagctcatccacttaagacagtcctccatatatacgatgatgaagtttctgattct
aaatcaaaacttatcacattgaagtttgaatacttgctgaagcttaacgttatctgtgtt
gggattgaaggatctaatgatggccctgaacataacattttgtgcaatttattcccagat
gaccctggatttgagcttcctcatgagtcggccaaactccgtgttggcaaaactgttgtt
ttcgatgaaaagagaatctcccgcccatataaatgggcacaacatttgggaggaatcgac
ttcttgccggaggtgtcaccattatcttcaggcagctatgccccagtcagtgaagcagct
aagcattctgccactacatctggtctatcagtgtatcgccagcaaaatcgagttgagaca
gttctgcagaggattcgtgataggaaaaaggctcagctggctcttgcggaacagcttcac
ttactaatggagcttaaatggccaactgttacctgtaacagtgttccatgggctgtgcat
gctccactatgcactttgtgtagttgggtacacgtaggatccttgcctagttcagttgca
cctttgactgttggtgaaacagaacaagttaagattcctccagagactgagattgcacaa
aaacctgatacttcaaaggaagaggtagaaaatgcaagagaagatggagaacttccatct
ttggttgctcctccaatctctgatattgatgttaagcgcacgtcaactaaaggatctgat
tatgaccattccaaacaattggcattgatttcaaaaagtgtagcatctccgatcagtaaa
ggaaaatctttaagttttaagaagaatgatgaagatgttgatctcctgatgttagattca
ggtagtgatcttgacgagcaggcaattgagccagagactgaaagtgtacccacagctgga
ggggatgagattgttgattattcatgggtagaacgtggagtacaggaatactgctttgta
ttgaatagaaaagctgatgttggtgataagaacatgaaattggaagccaaggtcaagatc
ttcatggaatatcctctcaggcctccactttttaccctgactctatctgtcacatcaatt
ggaggagcaagtcataatgatactggtaattccgattggtacaatgaacttcgtgctatg
gaagcagaggtcaatgctcacataatgaagatgataccatctaccgaagaaaactacatc
ttaggtcatcaaatatgtttccttgctatgctttttgacttttacatggaagaggaagct
ggatgtgataagaagaaacgaacctctgttgtcgacattgggttgtccagacctgtcaat
gggggtttggtttccagaacttatagaggaagagatcataggaaaatgatatcctggaag
agcaacggttgcactagtggttatccttgctag
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integrated database retrieval system
