Daucus carota (carrot): 108223523
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Entry
108223523 CDS
T05350
Name
(RefSeq) chaperonin CPN60-like 2, mitochondrial
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108223523
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108223523
03110 Chaperones and folding catalysts [BR:
dcr03110
]
108223523
03029 Mitochondrial biogenesis [BR:
dcr03029
]
108223523
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dcr04147
]
108223523
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
108223523
Messenger RNA biogenesis [BR:
dcr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
108223523
Chaperones and folding catalysts [BR:
dcr03110
]
Heat shock proteins
HSP60 / Chaperonin
108223523
Mitochondrial biogenesis [BR:
dcr03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
108223523
Exosome [BR:
dcr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108223523
Exosomal proteins of other body fluids (saliva and urine)
108223523
Exosomal proteins of breast cancer cells
108223523
Exosomal proteins of colorectal cancer cells
108223523
Exosomal proteins of bladder cancer cells
108223523
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
DUF5570
Flavoprotein
Motif
Other DBs
NCBI-GeneID:
108223523
NCBI-ProteinID:
XP_017253325
UniProt:
A0AAF1AY91
LinkDB
All DBs
Position
5:complement(798493..804176)
Genome browser
AA seq
568 aa
AA seq
DB search
MYRFATAALASRKQVCSRILSSRNYVAKDINYGSAARMAMLQGVNDLAEAVKVTMGPQGR
NVIIESSRGSPKVTKDGVTVAKSINFEDKAKNVGAALVKQVANATNTAAGDGTTCATVLT
QAIYAEGCKSIASGINVMDLRSGIMMAVDAVISNLKSRATMISTPEEIVQVATISANGDR
EIGELIGRAMEKVGKEGVITIVDGNTLDDELEVVEGMKLGRGYISPYFVTDAKTQKCELE
NPLILIHDKKISDMNTLVRILEMAIKRKRPLLIIAEDLEIDVLAMLVLNKHRAGVKVCAI
KSPGFGDNRRANLADIAVLTGGEVISEERGSSLDKVSIDVLGTAKKVTVSLDDTLILHGG
GDKKQIEERCEELRVTIEKSTAMFDKEKAQERLSKLSGGVAVFKVGGASEAEVGERKDRV
TDALNATRAAVEEGIVPGGGVALLHATKVLKDLRTVNDSQKRGVQIIENALKTPTHTIVS
NAGGDGALVLGKLLEQDDLNMGYDAAKGQYVDMVKAGIIDPLKVVRTALVDAASVSLLLT
TTEASIVDRLGEKNPLANRMPDMDALGY
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgtatcggttcgctactgctgccttggcttccagaaaacaagtgtgtagtaggatatta
tcttccagaaattatgttgctaaagacatcaattacggaagcgcggcacggatggctatg
ttgcaaggtgtcaatgaccttgctgaagctgttaaggtcactatgggtccccagggtcgt
aatgtgataattgagagtagccgtgggagtccaaaggttacaaaagatggtgtgacagta
gctaaaagtatcaatttcgaggataaagccaaaaatgttggtgctgctttggtgaaacag
gtggcgaatgctactaatactgctgcaggagatggtaccacttgtgccactgtattgacc
caagcaatatatgccgaaggttgtaaatcgattgcttctggcattaatgttatggatttg
cgcagtggtataatgatggcagttgatgctgtaatatccaacttaaagagcagagcaaca
atgattagcacaccagaagaaattgtccaggtagctactatctctgccaatggtgaccgc
gaaattggtgaattaatagggcgggcaatggagaaagttggaaaagaaggggtcattaca
attgttgatggtaatactctggatgatgagctagaagtagtggaagggatgaaactaggg
agaggttatatatctccatactttgttaccgacgcgaagactcagaaatgtgaactagaa
aatcccttgattcttattcatgataagaaaatctccgacatgaacacgcttgtaagaata
ttggagatggctataaagagaaaacgaccacttctgattattgctgaggatttggagatt
gatgtactggctatgctcgttcttaacaaacacagggctggtgttaaggtctgtgctatc
aagtctcctggttttggggataatagaagagccaatctggcggacattgcagttcttacc
ggaggagaggttatcagtgaagaacgtggttcaagtcttgacaaagtcagcattgacgtc
cttggcactgcaaaaaaggtaactgtttctcttgatgacacactaattctacatggaggc
ggagataagaagcagatagaggaaagatgtgaagagctaagggtcacaattgagaagagt
actgccatgtttgataaggagaaggcacaagagaggctatcgaagctctctggtggtgtt
gcagttttcaaggtaggaggggctagcgaggcagaagttggagaaaggaaagatagggtc
acagatgctttaaatgctacaagggctgctgtggaagagggcattgtcccaggtggtggg
gttgctctcctgcatgctaccaaagttttgaaggaccttagaactgttaatgatagccag
aaaagaggcgtccagataattgagaatgctctgaagacacctactcatacaatagtttca
aatgctggtggtgatggcgccttggttcttggcaagctattggaacaagatgatctcaat
atgggttatgatgccgccaaaggtcagtacgttgatatggtgaaggcggggattattgat
ccactgaaagttgttagaacagccttagtagatgctgccagtgtctctttattgttgaca
acaacggaagcatctattgttgatcggttgggggagaagaaccctttggctaatcgtatg
cccgacatggatgctttgggttattaa
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