Daucus carota (carrot): 108223536
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Entry
108223536 CDS
T05350
Name
(RefSeq) probable E3 ubiquitin-protein ligase RHC1A
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dcr04131
]
108223536
04121 Ubiquitin system [BR:
dcr04121
]
108223536
Enzymes [BR:
dcr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108223536
Membrane trafficking [BR:
dcr04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
108223536
Ubiquitin system [BR:
dcr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108223536
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
Zn_ribbon_19
zf-C3HC4_2
zf-RING_11
zf-rbx1
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_3
zf-ANAPC11
UBZ_FAAP20
zf-RING_5
CxC4
zf-RING_16
zf-Nse
DUF7410
HypA
VPS18_RING_C
DUF8054_C
Motif
Other DBs
NCBI-GeneID:
108223536
NCBI-ProteinID:
XP_017253341
UniProt:
A0A164ZCB9
LinkDB
All DBs
Position
5:complement(39962934..39964957)
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AA seq
310 aa
AA seq
DB search
MSSGGNTHWCYQCGRAIRPRRRSLVCPYCDGGFVQELSEVVGDRQEDYGVDRNDGFEFGS
TELIRDPMFGVNNELATFIRQMLMGGNSGFGGRTRSNMFPEFILHGRGPRRMSSDDGFEF
FFNGSPLGRGHQHANLNEFLMGPGLQEFIEQLTSNGRRGPPPAPRSAIDAMPTVKISRRH
LRSDSQCPVCQEKFELGSEAREMPCNHIYHSDCIVPWLVEHNSCPVCRVELPPVSGSAHG
NTRSSHHSETGNNRGNSSERDNSRQSQGRSLLSSLWPFRSSNQGSEAEGSRSRAPYDENS
GSNYAAWPFN
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagtggtgggaatacacattggtgttaccaatgtgggagggcgattaggcctcgg
agacgtagcttggtttgcccttattgcgatggggggtttgtgcaagaattgagtgaagtg
gtgggtgataggcaggaggactatggagttgatagaaatgatggttttgagtttgggtcc
acggagctcatccgtgacccgatgtttggggttaacaatgaattggctacttttattagg
cagatgttgatgggtggaaactcgggatttggtggtcggacgagatcaaatatgtttccc
gagtttatattacatggtcgtggtccgcggaggatgtcgagtgatgatggatttgaattc
ttttttaatggctctccgcttgggagggggcatcagcatgctaatttgaatgagtttctc
atgggacctggcttacaggaatttattgaacagctcactagtaacggtagacggggtcca
cctccagcacccaggtctgcaatagatgctatgcccactgttaaaatcagccgcaggcac
ttaagatctgactcgcaatgtccagtttgtcaagaaaagtttgagctgggatctgaagca
agggaaatgccgtgtaatcatatatatcattctgattgtatagttccttggttggttgag
cacaattcatgcccagtctgtcgtgtggagcttcctcctgtttcaggtagtgctcatggt
aatacaaggtcaagtcatcatagcgagaccggcaacaacaggggcaacagttctgagagg
gataatagtagacagagtcaaggaaggagtctgctatcatcgctatggcctttccgctca
tcaaaccaagggtcagaagcagagggaagtcgctctagagctccctacgacgagaacagt
ggatcaaactatgctgcttggcctttcaattag
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