Daucus carota (carrot): 108223572
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Entry
108223572 CDS
T05350
Name
(RefSeq) ruBisCO large subunit-binding protein subunit alpha
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108223572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108223572
03110 Chaperones and folding catalysts [BR:
dcr03110
]
108223572
03029 Mitochondrial biogenesis [BR:
dcr03029
]
108223572
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dcr04147
]
108223572
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
108223572
Messenger RNA biogenesis [BR:
dcr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
108223572
Chaperones and folding catalysts [BR:
dcr03110
]
Heat shock proteins
HSP60 / Chaperonin
108223572
Mitochondrial biogenesis [BR:
dcr03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
108223572
Exosome [BR:
dcr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108223572
Exosomal proteins of other body fluids (saliva and urine)
108223572
Exosomal proteins of breast cancer cells
108223572
Exosomal proteins of colorectal cancer cells
108223572
Exosomal proteins of bladder cancer cells
108223572
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
108223572
NCBI-ProteinID:
XP_017253383
UniProt:
A0AAF1B2F8
LinkDB
All DBs
Position
5:complement(38511731..38515759)
Genome browser
AA seq
590 aa
AA seq
DB search
MASANAISTASILSSPTQVSKRVNQLQGQKVNYRPSNGGKNRGRRLAVRAAAKDIAFDQK
SRAALQSGIDKLADAVGLTLGPRGRNVVLDEFGTPKVVNDGVTIARAIELPDAMENAGAA
LIREVASKTNDSAGDGTTTASILAREIINLGLLSVTSGANPVSIKKGIDKTVLALIEELE
NKARPVQGRDDIKAIASISAGNDDIIGTMVADAIDKVGPDGVLSIESSSSFETTVDVEEG
MEIDRGYISPQFVTNPEKMIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAE
DITGEALATLVVNKLRGIINVAAIKAPGFGERRKALLQDIAIMTGAEYQASDLSLLIENT
SVEQLGLARKITITKDSTTIIADAASKDEIQARIAQIKKELSETDSVYDSEKLAERIAKL
SGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSEFVPAIKAK
LEDAEERLGADIVQKALVAPASLIARNAGVEGEVVVEKVKASEWEVGYNAMTDKYENLVN
AGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKAKPKTAAAGVPQGMSI
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgctaacgccatttctactgcttcaattctctcctctcccactcaagtgagc
aaaagagtgaatcaattgcaagggcagaaggtgaattacaggccttctaatggcggaaag
aataggggcaggagacttgctgttagagctgctgcgaaagatatagcgtttgatcagaaa
tcgagagcggcgcttcagagcgggattgataagcttgctgatgctgttggtcttactctt
ggtcccagagggaggaatgttgtgttggatgaatttggaacccctaaagtggttaatgat
ggtgtcacaattgctcgagctatagagctgcctgatgccatggagaatgctggtgctgct
cttattagggaggttgcaagtaaaaccaatgattctgctggtgatggcacaacaactgcg
tccattcttgcacgtgaaataattaaccttggactcttgagtgtgacctctggtgctaat
cccgtttctattaagaaagggatagataaaactgtcctagccctgattgaagagctagag
aataaagcaagacccgttcaaggtcgtgatgacattaaagctattgcatcgatctctgct
ggaaatgatgacataattggtacaatggttgctgatgcaattgacaaagttggccctgat
ggtgttctttccattgaatcctcgtcttcttttgaaacaactgttgatgtagaggaggga
atggagattgacagaggatacatctcaccacaatttgttaccaaccctgagaaaatgatc
gttgaatttgagaatgctagagtattggtcactgatcagaaaatctctgcgataaaggac
ataattcccttgttagagaagaccacccaattgcgagcccctttgcttatcattgccgag
gatatcacaggagaagctttggctacacttgttgtgaacaaactgaggggcataatcaat
gttgctgctattaaagcacctggttttggagagagaagaaaagctctgcttcaagatatt
gcaattatgacaggagctgaataccaagccagtgacttgagtttactcattgagaacacc
tcggttgaacagcttggtttggcaagaaagatcaccatcactaaggattcgacgaccatt
attgctgatgctgcatcaaaggatgagattcaggctaggattgcacagattaagaaagaa
ttgtctgagaccgactctgtttatgattctgagaaacttgcagagagaatcgccaagtta
tctggtggggtcgctgttattaaggtaggtgctgcaactgagaccgagcttgaggatcgt
aagcttcgtattgaggatgcaaagaatgcaacttttgctgccatagaagaaggtattgtg
cccggtggtggtgctgccttggttcatttgtcagaatttgttcctgccattaaggccaag
cttgaggatgcagaggagcgtctcggagctgacatagtacaaaaggctttggttgcacct
gcatctttaatagcccggaatgctggggttgaaggagaagtagttgtggagaaggtgaag
gccagtgaatgggaggttggttacaatgcaatgactgacaagtacgagaacctagttaat
gctggtgtcattgatcccgcgaaggtaacaaggtgtgcactgcaaaatgcagcatcagtt
gcaggtatggtccttactacacaagctattgttgtggagaaggcaaagccgaagaccgct
gcagcaggcgtaccacaaggtatgtctatatga
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