Daucus carota (carrot): 108223616
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Entry
108223616 CDS
T05350
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108223616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108223616
Enzymes [BR:
dcr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
108223616
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108223616
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
108223616
NCBI-ProteinID:
XP_017253445
UniProt:
A0A164Y126
LinkDB
All DBs
Position
5:11148125..11155553
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AA seq
718 aa
AA seq
DB search
MRKHMRMLMRRPVSQTLTLIERSFCSSTTTSFGIKNVTKSNFDAALLDLRQHIRAADFVA
IDLEMTGITSAPWREAFELDRFDIRYLKLKDSANKFAVVQLGVCPFRWDPNVSAFLAHPH
NFYVFPRQELSISGTSCEFMCQTASLEFLAKYQFDFNACINEGISYMSRGQEEEARRLFT
SLYDDVFLDSHPSSKDIKDKPISRVADVLFTERMKSKISDWKNGLLQVRNRDHECQGSRK
ESFQQFENIFYLMRPAVKLHGFTSRQLRLIQLVTKNHFDDLAYIRVSGEGTSLQQLLVYT
DSTTDKDLLMKEVKGILLKETELKIKNAVGLRHVIDLLSSEKKLVVGHNCFLDIAHLYSK
FIAPLPATGEDYISSIAKHFPYIIDTKLLLNNNNVFQVIKQKRSTSLAKAFAFLCPDIVS
GVKTSGSAYKPCIKVEVQVDDTRSSNWNSGAKHEAGYDAFMTGCVFAQACSHLGIKFESQ
VPSPSLALEEKLQGCINTLYLSWINGEIIDLTTGKRIVESSGSSDRKYHHSKIFFSNIVL
LWGFPSKLKAAEIKECICKVFGQSSVASIYHLDETAVFVKFSKAELVTDFLHLKATLEKN
NDPISVLHPLSKILDGGCTCAANYEVYKEICESPISEMLFADQAATIGIKWKTKLFVPKQ
KESHRETLGPEDGQFTGSTSPSEKEIKKLVSVLDGLSSGRTSNRLADSLHLAQAQIGR
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaacacatgaggatgttgatgcggaggccagtctcccaaaccctaaccctaatt
gaacgcagcttctgctcatcaaccaccaccagctttggcatcaaaaacgtgacgaaatca
aacttcgacgccgccctcctggacctccggcaacacatccgtgccgccgatttcgtggca
attgatctcgaaatgaccggaatcaccagcgccccctggagagaggctttcgagctcgac
cgtttcgatattcgctatctcaaactcaaagactccgctaacaagttcgctgttgttcag
cttggcgtttgccctttccgatgggaccctaacgtctccgccttcctggctcatccccac
aacttttatgtatttccacgtcaagagctttctattagcgggacatcgtgtgaattcatg
tgccagacagcgtcactagaattcttggcaaagtaccagtttgattttaatgcttgtata
aatgaagggatatcatatatgtccagagggcaagaagaagaagcccggagattgtttact
agtttgtatgatgatgtgtttcttgattcacatcctagttccaaagacataaaagataag
ccaatatctagggtggctgatgttcttttcactgagagaatgaagagcaaaattagtgat
tggaaaaatggactattacaagttagaaatagggatcatgaatgtcaagggagcagaaag
gaatcatttcaacagtttgaaaacattttttacttgatgcgtccagctgtcaagctgcat
ggttttacatcccgccaactcaggttgattcagttggtaaccaagaatcattttgatgat
cttgcttacattcgcgttagtggtgagggcaccagtttgcaacagttacttgtttataca
gactctacaactgacaaggatttgcttatgaaagaggtaaaaggtatccttcttaaagag
acagagctgaagataaaaaatgctgttggattgcgccatgtgattgatcttcttagttct
gaaaagaaattggttgttggtcataattgctttcttgatatagcacatttgtacagcaaa
tttatagctcctcttcctgccaccggtgaagactatatttcctccattgccaagcacttc
ccatacataattgacacaaaactgctcctgaataataacaatgtatttcaagttatcaag
cagaagaggagcacgtcacttgccaaagcatttgcttttctatgtcccgatattgtgtca
ggtgtcaaaacctctggatcagcatacaagccttgcattaaggtggaggtccaagtagat
gatacgaggtcgtctaattggaactcgggagccaagcatgaagccggttatgatgcattt
atgacgggttgtgtttttgctcaggcttgcagtcatctaggtataaagtttgaatcccag
gtaccctctccaagtttagctctggaagagaagctgcaaggatgcataaataccctatat
cttagttggatcaatggagaaattattgatcttacgactggtaaaaggattgtggagtct
tcaggttctagtgaccgcaagtaccaccactcaaagatttttttctcaaatattgtcttg
ctgtggggattcccatctaagctcaaggcagcagaaataaaagaatgtatatgtaaagtt
tttgggcaaagctctgtcgcatccatttaccacttggatgaaactgcggtgtttgttaag
ttcagcaaggctgaacttgtgacagatttcttacatttgaaggctaccctggaaaaaaac
aatgacccaatctcagttttgcatccactttcaaaaattttggatggcggatgtacttgt
gctgccaattacgaagtttataaagaaatttgtgagtcgccgatttcagaaatgttgttt
gcagatcaagctgcgacaattggtattaaatggaaaaccaagttattcgttcctaagcag
aaagaatcacaccgagaaactttaggcccagaagatgggcaatttacaggttccacttct
ccaagtgagaaagagattaaaaaactagttagtgtccttgatggtttatcgagtggccgc
acaagcaacagactcgcagattccttgcatcttgcccaggctcagattggtagataa
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