Daucus carota (carrot): 108223778
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Entry
108223778 CDS
T05350
Name
(RefSeq) DNA mismatch repair protein MLH1
KO
K08734
DNA mismatch repair protein MLH1
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03430
Mismatch repair
dcr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
108223778
03460 Fanconi anemia pathway
108223778
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108223778
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
108223778
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mlh1_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
108223778
NCBI-ProteinID:
XP_017253686
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All DBs
Position
5:17667393..17690235
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AA seq
740 aa
AA seq
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MALETTSTLMEIDEEENASVIVKEPPKIHRLDESVVNRIAAGEVIQRPVSAIKELVENSL
DAGSTSINIVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSTFEDLHSIKSMGFR
GEALASMTYVSHVTVTTITPGQLHGYRASYRDGMMEYEPKACAAVKGTQIMIENLFYNMT
ARKKTLQNSGDDYPKIVDLLSRFAIHHINVSFSCRKHGAPRADVHSVASSSKIDAIRSVY
GVSVAQNLMAVEASDDDASSSVFEMHGLISDSNYIAKKITMVLFINDRLVECAALKRAVE
IVYSATLPKASKPFIYMSLVLPSEHVDVNVHPTKREVSLLNQEVIIEKIQAVVESKLRNS
NEGRTFQEQTVDPMPSSPMTASQASPSAPSTSASGFKMPKVPHKIVRTDSQDPAGRLHAY
MHIKSPVHVERNSALASVRSLVRRRRNPRETADLTSVQELLDDINRSCDSGLLDVVKHCT
FIGMADDIFALVQHKTHLYLANVVNLSKELMYQQVLRRFAHCNAIQLSEPAPLLELILLA
LKEDDIDADGDGNDDLKNKIAEMNTDLLRRKSDMLDDFFSIHVDEEGNLGRLPVILDQYT
PEMDRLPEFVLCLGNDVDWDDEKTCIQSVAAAIGNFYAMHPPLLPNPAGEGLQFYKRKPS
CKSEERDATTLGDSGEIKDDIEHELLSEAENAWAQREWTIQHILFPSMRLFFNPPCSMAR
NGTFVQVASLEKLFKIFERC
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttgaaacgacatcaaccctaatggaaatagacgaagaagaaaatgcatcggta
attgtgaaagaaccgccgaagatccaccgcttagatgagtcggtcgtcaatcgaatcgcc
gccggcgaagtcattcagcgccctgtttccgccatcaaagagctcgtggagaacagtctg
gatgctggttctacttccataaacatcgtcgttaaggacggcggtcttaaacttattcaa
gtctccgatgacggtcacggtattcgatatgaggacttgccgattctgtgcgagaggcac
acgacgtcgaagctttctacatttgaagatttacattcaattaagtctatgggtttcaga
ggagaggctttggctagcatgacctatgtaagtcatgtgacagtcaccaccattacccct
ggtcaattgcatggctacagggcatcttatagagatggcatgatggagtacgaacccaaa
gcttgtgctgcagtaaaggggactcagataatgattgagaatttgttttacaacatgact
gctcgaaagaaaacacttcagaattctggtgatgattatcctaaaattgtagatctgcta
agtcggtttgccattcatcacataaatgtgagcttttcatgcagaaagcatggcgcacct
agagcagatgttcactcagtagcttcatcctcaaagattgatgcgattagatctgtttat
ggggtgtcagttgcgcagaatctaatggcagtagaagcttctgatgatgatgcatctagt
tccgtttttgaaatgcatggtctaatttcagattcgaattacatcgcaaagaagataact
atggtacttttcatcaatgatagattagttgagtgtgctgctctgaagagggctgttgaa
attgtttattctgcaactttgcctaaagcatcgaaacctttcatatatatgtcacttgtg
ttgccttcagagcatgttgatgtgaacgttcatccaacaaagagagaggtgagccttttg
aaccaagaagttattattgaaaagatacaagcagtggtggaatcaaaattgagaaactcc
aatgagggaaggacattccaagaacagacagtagacccaatgccatccagtcctatgaca
gcaagccaagcttcacctagtgctccctcaacttcagcctcaggcttcaaaatgccaaaa
gttccacataagattgtgcggacagattcacaggatcctgctggaaggctgcatgcctac
atgcatatcaaatcccctgtccatgttgaaaggaatagtgctttagcctctgtaaggtct
ttggtcaggcgaagaagaaatccaagggaaaccgctgatcttactagcgtccaagagctc
cttgatgatatcaaccgttcctgcgattctggtctgttggacgtcgtaaagcactgcaca
tttattggaatggcagatgatatatttgctttggttcagcataagactcacctatatctt
gctaatgttgtgaacttgagcaaagagctcatgtatcaacaagtcttgcgtcgttttgca
cattgtaatgccatacaactaagtgaaccagctcctctgctggaattgattttactagca
ctaaaggaggacgacatagatgctgatggtgatggaaatgatgatttgaagaataaaatt
gctgaaatgaacacagatttgctgagacggaagtcagatatgctagatgattttttctct
attcatgttgatgaagagggtaatttggggagactccctgttatacttgatcagtacaca
cctgaaatggaccgtctcccagaatttgtattatgtttgggcaacgatgttgattgggat
gatgagaaaacctgcattcaatcagttgcagctgctataggaaacttctatgccatgcat
cctcctcttttgcccaacccagccggtgaaggtttacaattctacaagaggaaaccatct
tgcaaatctgaagaacgagatgcaacaactttaggtgatagtggtgagataaaggatgat
attgagcatgaactgctttcagaggctgagaatgcttgggcgcagcgcgaatggacaata
caacacatcttattcccttccatgagacttttctttaatcccccatgttcaatggccaga
aatgggacatttgtccaggtggcttcgttggagaaactattcaagatattcgagcgatgc
tga
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