Daucus carota (carrot): 108223913
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Entry
108223913 CDS
T05350
Name
(RefSeq) uncharacterized protein LOC108223913
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dcr03016
]
108223913
Enzymes [BR:
dcr01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
108223913
Transfer RNA biogenesis [BR:
dcr03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
108223913
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
Motif
Other DBs
NCBI-GeneID:
108223913
NCBI-ProteinID:
XP_017253873
UniProt:
A0A162A063
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Position
5:15915464..15925406
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AA seq
620 aa
AA seq
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MEDIEDMLAGAPAGFRLPISASVGVNPKKKIKQPSSFQHFLTPLPSPKIPGTQVIYIKTF
GCSHNQSDSEYMAGQLSSFGYALSDNADEADLWLINTCTVKSPSQSAMDTLISRCKTAKK
PLVVAGCVPQGSRDIKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLNRKTLPALDLPK
VRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVGRVRSVVADGVKEIWLSSE
DTGAYGRDIGVNLPILLNAIVAALPLDGSTMLRIGMTNPPYILEHLKEIADVLRHPCVYS
FLHVPVQSGSDAILSAMNREYTVGDFRTVVDTLTELVPGMQIATDIICGFPGETDEDFAQ
TVNLIKDYKFPQVHISQFYPRPGTPAARMKKVPSTSVKKRSRELTSVFESFTPYNGMEGR
IERIWITEIATDGKHLVGHTKGYMQVLVVGPGSMLGTSAIIRITSVGRWSVFGEVIETLN
STKDNVESKERSDRSENCCSLSNLEESCACAGELDACACGHESCGGLNLTEENGGSLSKS
GSWADDRSNLNVFGWLLRKRKNHQTTKLEDDSLQHIARQESAAGAHMWTAVDRLLLGGIC
ASFLTILALFLYFASNILSS
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggaagatatagaggatatgttggccggagctccggcaggtttccggctaccaatatca
gcttccgtgggcgtcaatcccaagaaaaagattaaacagccttcttcctttcaacacttt
ctcactccacttccctctcctaaaatccctggcactcaggtaatttatatcaagactttc
ggatgttctcataatcagagtgacagtgagtacatggcaggtcagctctcgtcgtttgga
tacgctttaagtgacaatgcggatgaggcggacctttggttgattaatacgtgcacagtt
aagtcaccgagccagtctgccatggacactctaatatcaagatgtaaaaccgctaaaaag
cccctcgttgtggcaggatgtgtgcctcaaggaagtcgagatataaaagagttggaagga
gttagtatagttggagtgcaacagattgatcgtgtggtagaagtggtagaggagacactg
aaaggtcatgaagtcaggctgttgaatcgtaagaccctaccggcacttgatttaccgaag
gttaggaaaaacaagtttgttgagatccttccaatcaatgttggctgtttaggtgcttgc
acttattgcaaaactaagcatgctcgtggtcatctaggaagctacactgtagacagcctt
gtcggacgtgtcagaagcgtcgtagctgatggagttaaagaaatttggttaagtagtgaa
gacaccggagcatatggtcgtgacataggagtcaatcttcccattctattaaatgctatt
gtagcagcccttccattggatggaagcacaatgcttcgcattgggatgactaatcctcct
tatatacttgaacatttgaaggagatagcagatgttttgcgtcatccatgtgtgtactct
tttctccatgtaccagtacaatcagggagcgatgcaatcttgagtgcaatgaaccgcgag
tatacagttggtgatttcaggactgtagtagatacattaactgaacttgttccagggatg
caaattgctactgatatcatttgtggctttccaggtgaaactgatgaggactttgcgcaa
actgttaaccttataaaggactacaagtttcctcaagttcacatttcacagttctatcct
cgtcctggaacccctgctgcaaggatgaagaaagtcccaagtacttcagtgaagaagcgg
agtcgagaactgacttccgtttttgaatcttttacaccctataatggaatggaaggcaga
atagagagaatatggattactgaaatagcaactgatggaaaacatttggtgggtcacacc
aagggatacatgcaggtgctggttgttggcccaggaagcatgttggggacatcagcaata
attagaattacatctgtaggaaggtggtcagtttttggggaagtgattgaaacactaaat
tcaactaaagacaatgtggagtcaaaagagagaagtgacagaagcgagaactgttgttcc
ctctccaatctagaggagtcgtgtgcatgtgcaggggagttggatgcttgtgcatgtgga
catgagagctgtggaggactaaatttaacagaagaaaatggaggatcactctcaaagagt
ggctcgtgggcagatgatcgaagtaatttgaatgtctttggttggttgctaaggaagagg
aagaatcatcaaacaacaaagttagaggatgattcattgcaacatatagcaaggcaagaa
agtgcagcaggtgcgcacatgtggactgctgttgataggctccttttgggtggaatatgt
gcaagctttttgacaattctagctctatttttgtactttgcatcaaatatcctttcttcc
taa
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