Daucus carota (carrot): 108224126
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Entry
108224126 CDS
T05350
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic isoform X1
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
108224126
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108224126
Enzymes [BR:
dcr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
108224126
DNA repair and recombination proteins [BR:
dcr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
108224126
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
SAP
Exo_endo_phos_2
Vertnin_mid
Motif
Other DBs
NCBI-GeneID:
108224126
NCBI-ProteinID:
XP_063950426
LinkDB
All DBs
Position
5:complement(42308492..42314245)
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AA seq
514 aa
AA seq
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MYHVFPSPTILGFRTFLIRPSLAVVQSSLGFSRAMASSKATSKPTIIAKSDDESEAGNVE
NDFESDSDSIDRLSVVQLRQKLRSVGVPVKGRKTELVDALRAYLSSNPGDDCKNMEPKSN
SSKENLKRKVESSSVQIQAESVSSTVSKVAVAKRTKKGVNKAPDEETIAESKTKRVAKDK
VTSIRSNKATVSKALCAKEDVPAEVDGESKMVDLIENQFEPWTVLAHKKPQKGWIPYNPR
TMRKPRLTADTKHVKLMSWNVNGLRALLKLEGFSALQLAQREDFDVLCLQETKLQEKDVE
AIKCSLLEGYKDSFWTCSVSKLGYSGTAIISRIKPLSVRYGLGISDHDSEGRLVTVEFDS
FYLLCSYVPNSGDGLKRLSYRVTEWDTSLSNYMKELEKMKPVILTGDLNCAHEEIDIYNP
AGNKRSAGFTIEERQSFETNYLKNGFVDTFRNQHPGVVGYTYWNYRHNARKTNKGWRLDY
FLVSESISDKVYDSYILPDVGGSDHCPIGLILTL
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgtatcatgtatttccatctcccacaatactaggtttccgcactttcctaattcgtcca
agtcttgcagtggtccaaagcagtttagggttctcaagagcaatggcgtcttctaaagct
acctctaaacctactattattgccaaaagtgatgatgagtctgaagctggaaatgttgaa
aatgattttgagagtgattcggatagtatagataggttgtcagttgttcaattgagacag
aagctaaggagtgttggtgtcccggtgaaagggcgtaaaactgagctggtggatgctttg
agggcttatctaagctcaaatcctggtgacgactgcaaaaacatggaaccgaaatcaaat
tcttcgaaggaaaatctgaaaaggaaggttgaaagttcgtctgttcagatacaagccgag
agcgtcagttctactgtttcaaaggttgctgtggcgaaacggaccaagaaaggtgtgaat
aaggcaccagatgaggaaaccattgcggaatctaaaaccaagcgagttgctaaagataaa
gttacatcaataagatctaacaaggcaacagttagtaaagctctatgtgcaaaggaagac
gttccagcggaagtggatggagaatctaagatggttgatcttatagagaatcaatttgaa
ccctggactgttcttgcacacaagaagccacaaaaagggtggataccttacaatccccgg
accatgaggaagcctcgtcttactgctgatacaaagcatgttaagttgatgtcttggaat
gtcaatggcttacgagctttactgaaattagaaggcttttctgcactgcaacttgcacaa
agggaagactttgatgtgttgtgcttgcaagaaactaaattacaggagaaagatgtcgag
gcaatcaaatgctctcttcttgaaggatataaagatagcttttggacatgtagcgtttcc
aagcttgggtattctggtactgcaattatctcaaggataaaaccactttcagtgagatat
ggccttggcatatcagatcatgatagtgaagggcgtcttgtgacagtagagtttgattct
ttctatttgctatgtagttatgttccaaattcaggtgatggtctaaaaagactgtcatac
agagttactgagtgggatacttctctaagcaattacatgaaagagctagagaagatgaag
cctgttattttaacgggagatttgaattgtgcgcatgaagaaatcgatatttataatcct
gcaggaaataagagaagtgctggttttacgattgaagaaaggcagtcattcgagacaaac
tacttaaaaaatggcttcgttgacacgtttaggaatcagcatcctggtgttgttggctat
acttactggaattacaggcataatgcacgcaagacaaataaaggatggcgcttggattac
ttccttgtttcagagtccatctccgacaaggtttatgactcgtatattctcccagatgtt
ggtggtagtgatcattgtcctattggcctcattcttacgctctag
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