Daucus carota (carrot): 108224236
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Entry
108224236 CDS
T05350
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1
KO
K11805
DDB1- and CUL4-associated factor 7
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
108224236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dcr04121
]
108224236
03036 Chromosome and associated proteins [BR:
dcr03036
]
108224236
Ubiquitin system [BR:
dcr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
108224236
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
108224236
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
Beta-prop_THOC3
Beta-prop_WDR5
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_1st
WD40
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_WDR3_2nd
Beta-prop_WDR41
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
WDR55
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
MIOS_WD40
Beta-prop_WDR36-Utp21_1st
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
108224236
NCBI-ProteinID:
XP_017254238
UniProt:
A0A164WU92
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Position
6:36072534..36073875
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AA seq
336 aa
AA seq
DB search
MDNSTQESHLRSDTLVTYDSPHTLYAMSISSSPTNRIALGSFLEEFTNRVDVVSFDDQTL
TLKRNPNLSFDHPYPPTKLMFHPNPLASGKPNDILASSGDYLRLWEIKENSVEPISLLNN
SKSSEFCAPLTSFDWNEVEPRRIGTSSIDTTCTIWDVERGVVETQLIAHDKEVHDIAWGE
AGVFASVSADGSVRIFDLRDKEHSTIIYESPHPDTPLLRLAWNKQDLRYMATILMDSNKV
VILDIRSPTMPVAELERHRGSVNAIGWAPLSCRHICSGGDDGQALIWELPTVAGPSGIDP
MSMYTASSEINQLQWSAAKPDWIAIAFANKMQLLKV
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atggacaactcaacgcaagaatctcacctccgatccgacacgctggtcacctacgactct
ccccacactctctacgccatgtccatctcctcctcccccaccaatcgcatcgctctcggc
agcttcctcgaggaattcaccaaccgagtcgacgtcgtttcgttcgacgaccaaacccta
actctcaaacgaaaccctaatctctctttcgaccacccctaccctcctactaagctcatg
tttcatcccaatccactcgcctccgggaagcccaacgatattctcgcgtcttccggcgat
tatctccgcctttgggaaattaaagagaattcggttgagccgatatcgctgcttaataat
agtaagagtagtgagttttgtgcgccgttgacctcgtttgactggaatgaggtggagccg
cggcggattgggacgtcgagtattgatacgacttgtacgatttgggatgtcgagaggggc
gtggtggagacgcagctgattgcgcatgataaggaggttcatgacattgcttggggtgag
gctggggtgtttgcctcggtgtcggcggatggttcggttaggatttttgatttgagggat
aaggagcattcgacaattatttatgagagtccgcatccggatactccgttgcttaggctg
gcgtggaataagcaggatttgaggtatatggcgacgattttgatggatagtaataaggtt
gtgattttggatattcggtcgcctactatgcctgtggcggagttggagaggcataggggg
agtgtgaatgcgattggctgggctccgttgagttgtaggcatatttgttcgggtggggat
gatggacaggcgcttatttgggagttgcctacggtggctgggcctagtggtattgatccg
atgtcaatgtatactgctagctcggagattaatcagcttcagtggtcagctgcaaagcct
gattggattgctattgcatttgccaacaagatgcagctgttgaaagtttaa
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