Daucus carota (carrot): 108224746
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Entry
108224746 CDS
T05350
Name
(RefSeq) uncharacterized protein LOC108224746
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dcr03016
]
108224746
Enzymes [BR:
dcr01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
108224746
Transfer RNA biogenesis [BR:
dcr03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
108224746
Prokaryotic type
108224746
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
108224746
NCBI-ProteinID:
XP_017254952
UniProt:
A0A161XAJ1
LinkDB
All DBs
Position
6:5544263..5546192
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AA seq
497 aa
AA seq
DB search
MEKEAAATQVEGEVNPKKQKMSSDEVRPKRRKIAILFAYCGVGYQGMQKNPGAKTIEGDL
EEALFQAGAVPEHDRGIPKRFDWARSARTDKGVSAVGQVVSGKFYIDPTDSFIPRLQSHL
PIQFKIFGYKRVTASFNAKKFCDRRRYVYMLPVFALDPTAHRDRESVLASFGSDVQLLKC
FQCSERGRKVFGVMGKRSFGAVTSESENLSNSLSTVSDLGSEDVKLIDLANAGGDNVNGN
DLNAEHVKEFGNDQNEAIEEMKIDVELNESGFTYGEKEKQRFNNILKSYEGTHNYHNFTT
RTKADDPSAHRYIISFKADTTVTVDGIEFIKCEVVGQSFMLHQIRKMIGVAVAIMRNCAP
ESFIDIALQKDINITVPMAPEVGLYLDECFFTSYNQKWKDSHEEVSMNDYEAEAEDFKIK
HIYSHIASSEHKDGAVGLWLHSLNYRNYPDLLVTTNDKKPVMKNDEVEITTNGRGSEAEV
SSAEVKVTTEKDAEVIA
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagaagcagcagctacacaagtagaaggagaagtgaaccctaaaaaacagaaa
atgtcctccgacgaagtcaggcccaaacgccgcaaaatcgcaatactattcgcctattgc
ggagttggttatcaaggaatgcaaaagaacccaggtgccaaaaccatcgaaggcgatttg
gaagaagctctttttcaagctggggctgttcccgaacacgaccgtggtatccccaagcgt
ttcgattgggctcgctctgctcgtactgataagggtgtgagtgctgttggtcaagttgtt
tctggtaaattctacattgacccaactgattcttttattccccgcttgcaatctcatttg
cccattcagtttaagatttttggctataagcgtgtcacggcctcgtttaatgctaaaaag
ttttgtgatcgtaggaggtatgtttatatgttgcctgtttttgcacttgatcctactgca
catcgtgatagagagagtgtgttagctagttttggctctgatgttcagcttctcaagtgt
ttccagtgttccgagagaggccgcaaggtgtttggtgtgatgggtaagaggagttttggt
gcggtcacatctgagtcggagaatttgtcaaacagtttgtctacggtgtctgatttggga
agtgaagatgttaaattgattgatctggctaatgctggcggtgataatgttaatggtaat
gaccttaatgctgagcatgtaaaagaatttgggaatgaccaaaatgaggcaatagaggaa
atgaaaattgatgttgaattgaatgagagcgggtttacttatggagaaaaggaaaaacag
aggtttaataacatcttgaaaagttatgaaggaactcacaattatcacaacttcacaact
agaacaaaagctgatgatccctctgctcaccggtacattatttcgttcaaagctgatacc
acagttactgttgatggtattgaatttatcaagtgtgaggttgtaggacaaagcttcatg
cttcatcaaattcggaagatgattggtgtggccgttgcaattatgagaaattgtgctcca
gaatcctttattgacattgctctgcagaaggatattaatattactgttcctatggccccg
gaagttggattatatttggatgagtgcttcttcacatcatataaccagaaatggaaagat
agtcatgaagaagtgtctatgaatgattatgaggctgaagcagaggacttcaagatcaaa
cacatatattcccatattgcatcatcagaacacaaggacggagctgttggcctttggctg
cattctctaaactaccgcaattatcctgatttacttgtaacaactaatgataagaagcct
gttatgaaaaatgatgaagttgaaattacaactaatgggagaggttctgaagctgaagtc
tcttctgcagaagttaaggtcacaaccgagaaggatgccgaggtgattgcctaa
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