Daucus carota (carrot): 108224760
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Entry
108224760 CDS
T05350
Name
(RefSeq) WD-40 repeat-containing protein MSI4 isoform X1
KO
K10752
histone-binding protein RBBP4
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03082
ATP-dependent chromatin remodeling
dcr03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108224760
03083 Polycomb repressive complex
108224760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dcr03036
]
108224760
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
108224760
Histone modification proteins
HAT complexes
HATB complex
108224760
HDAC complexes
Sin3A-HDAC complex
108224760
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
108224760
PRC2.2
108224760
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
108224760
Heterochromatin formation proteins
Other heterochromatin formation proteins
108224760
Chromatin remodeling factors
NuRD complex
108224760
NuRF complex
108224760
NuRF complex (fruit fly)
108224760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
CAF1C_H4-bd
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WD40_WDHD1_1st
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML
EIF3I
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_2nd
Beta-prop_SPT8
eIF2A
Beta-prop_WDR75_1st
Beta-prop_DCAF12
WD40_RFWD3
Beta-prop_SCAP
Beta-prop_WDR19_1st
DUF6525
Motif
Other DBs
NCBI-GeneID:
108224760
NCBI-ProteinID:
XP_017254971
UniProt:
A0AAF0X9L6
LinkDB
All DBs
Position
6:12477438..12488839
Genome browser
AA seq
445 aa
AA seq
DB search
MKDTETTEEERERRYTQWKSLVPVLYDWLANHSLLWPCQSCRWGPVIEQATYKTRQRLYL
SERTDGTVPNTLVIANCEIVKPRVAAAEHISQFNEESRSPFIKKFKTILHPGEVNRIREL
PHNSNIVATHTDSPDVLVWDIESQPNRQANLASPISRPDLILTGHKDNAEYALAMCPTEP
FVLSGGKDRSVILWSIHDHISTLAGDPKSAKSSKTGSIKTSKGDRSDDMPSSSPYVQARG
TFQGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDTRSGSTPVIKVERAHNADIHCVDWN
PVDVDLILTGSADKTVRMFDRRNLTSGPINIFAGHSEAVNCVQWSPDRSSVFGSAAEDGI
LNIWDYKQVDKQDKSTGLFFQHAGHRDKVVDFHFNSSDPWTIVSVSDDTDTGGGTLQIWR
MLDLLYKPEEDALADLEKFKSQLLS
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgaaggataccgagacgacggaggaggagagagagagaagatacactcagtggaaatca
ctagtacccgttctctatgactggctcgccaatcacagtcttctctggccttgccaatct
tgccgatggggccctgtcattgaacaagccacttacaagactcgtcaacgtctttacctc
tccgaacggacagacggcactgtccctaatacacttgttattgcaaattgtgaaattgtg
aaacctagggttgcagctgcagaacacatttctcagttcaatgaagagtcgcgttctccc
tttataaagaagtttaagaccattttgcatccaggcgaggtgaatcggattagagaactt
cctcataacagcaacatcgtggctacgcacactgatagtcctgatgtcctcgtttgggat
attgaaagtcaacctaatcgtcaagctaacctggcaagccccatctctcgtccagatctg
atactgactgggcataaggataatgctgaatatgcactagctatgtgtccaactgaacca
tttgtgctttctggagggaaggacaggtctgtgatactatggagtatacatgatcacata
tccactctagcaggagatccaaaatcggcaaaatcttctaaaacaggtagcatcaagacc
tccaagggtgatagaagtgatgacatgccatcctccagcccctatgtacaagctcgagga
actttccaagggcatgaagatactgtagaagatgtgcagttttgcccctcaagtgctcag
gagttttgcagtgttggtgatgattcctgccttatcttgtgggatacaagaagtggttct
actcctgtcatcaaggttgagagagctcacaatgccgatattcactgtgttgattggaat
cctgttgacgttgatctaatactgacagggtctgctgataaaaccgttcgcatgtttgat
cgtcggaacctcacttcagggcctattaacatatttgcgggtcacagtgaagctgtcaat
tgtgtacagtggtctccagataggtcatctgtctttggaagtgctgcagaggatggcatc
ctgaacatttgggattataagcaggttgacaagcaagacaagtcaacaggcttattcttt
caacatgctgggcacagagacaaggttgttgacttccactttaattcttctgacccttgg
acgattgtcagtgtctctgatgatactgacacggggggcggaacgctgcagatatggcgg
atgcttgatctcttatacaagccggaagaggacgctcttgctgatctggagaaatttaaa
agtcaattgttatcatga
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