Daucus carota (carrot): 108224877
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Entry
108224877 CDS
T05350
Name
(RefSeq) RNA-binding protein Y14A
KO
K12876
RNA-binding protein 8A
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03013
Nucleocytoplasmic transport
dcr03015
mRNA surveillance pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108224877
09122 Translation
03013 Nucleocytoplasmic transport
108224877
03015 mRNA surveillance pathway
108224877
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108224877
03041 Spliceosome [BR:
dcr03041
]
108224877
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108224877
Spliceosome [BR:
dcr03041
]
Complex C
Other components
EJC/TREX
108224877
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_5
Motif
Other DBs
NCBI-GeneID:
108224877
NCBI-ProteinID:
XP_017255109
UniProt:
A0AAF0XG04
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All DBs
Position
6:complement(39383029..39385985)
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AA seq
189 aa
AA seq
DB search
MADLEVEAVNFEPEDDDLMDEDNAADIDAAPMPRLKSAITGSNMRTKGRGFRTETDEERS
MRMSGRFDSLDSEGGPGPERSIEGWIILVTGVHEEAQEDDLHNAFGGYGQIKNLHLNLDR
RTGFVKGYALIEYETFEDAQKAIAEMDGGELLTQTIAVDWAFSKGPYKRRNARRRSPRGR
RSRSPRRRF
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
atggcggatctcgaagtagaagctgttaattttgagccggaggatgatgatctcatggac
gaagataacgctgctgatatcgatgcggcgcctatgccgcgcctcaagtcggctatcact
gggtccaatatgaggaccaaagggcgtggttttcgtactgagactgatgaggaacggagt
atgaggatgtctgggaggttcgattcgcttgattctgagggcggtcctggtcctgaacga
tctattgaaggatggatcattctggttactggagttcatgaagaagcacaagaggatgac
cttcataatgcatttggtggatatgggcagattaagaatttgcacttgaatcttgatcgt
cgtactggttttgttaaggggtatgctctgattgaatatgagacttttgaagacgcgcag
aaagccatagcagaaatggatggcggtgaattgcttactcaaactattgcagttgactgg
gcttttagcaaaggtccctacaaacgaaggaatgcaaggaggagatcaccacgtgggcgt
cgttcaagaagtcccaggcggagattttaa
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