KEGG   Daucus carota (carrot): 108225320
Entry
108225320         CDS       T05350                                 
Name
(RefSeq) sm-like protein LSM5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
dcr  Daucus carota (carrot)
Pathway
dcr03018  RNA degradation
dcr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108225320
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108225320
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dcr03019]
    108225320
   03041 Spliceosome [BR:dcr03041]
    108225320
Messenger RNA biogenesis [BR:dcr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     108225320
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     108225320
Spliceosome [BR:dcr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    108225320
SSDB
Motif
Pfam: LSM DUF7452
Other DBs
NCBI-GeneID: 108225320
NCBI-ProteinID: XP_017255648
UniProt: A0AAF1AF98
LinkDB
Position
6:4284437..4291626
AA seq 87 aa
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEFTAEGR
RVTKLDQILLNGNNIAILVPGGSPDPE
NT seq 264 nt   +upstreamnt  +downstreamnt
atggctaacaacccttcacagcttctcccttcagagctaatagatcgatgtattgggtca
aagatttgggtgataatgaaaggagacaaggaacttgttggaactctcagaggttttgat
gtttatgtcaacatggttcttgaagatgttactgaatatgaattcactgctgaagggcgt
agagtgacaaagctcgaccagatcttgcttaatggaaacaacattgcgattctggtccct
ggtggttcccctgatccagaatga

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