Daucus carota (carrot): 108225320
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Entry
108225320 CDS
T05350
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108225320
09123 Folding, sorting and degradation
03018 RNA degradation
108225320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108225320
03041 Spliceosome [BR:
dcr03041
]
108225320
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108225320
mRNA degradation factors
5'-3' decay
Lsm complex
108225320
Spliceosome [BR:
dcr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
108225320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF7452
Motif
Other DBs
NCBI-GeneID:
108225320
NCBI-ProteinID:
XP_017255648
UniProt:
A0AAF1AF98
LinkDB
All DBs
Position
6:4284437..4291626
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AA seq
87 aa
AA seq
DB search
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEFTAEGR
RVTKLDQILLNGNNIAILVPGGSPDPE
NT seq
264 nt
NT seq
+upstream
nt +downstream
nt
atggctaacaacccttcacagcttctcccttcagagctaatagatcgatgtattgggtca
aagatttgggtgataatgaaaggagacaaggaacttgttggaactctcagaggttttgat
gtttatgtcaacatggttcttgaagatgttactgaatatgaattcactgctgaagggcgt
agagtgacaaagctcgaccagatcttgcttaatggaaacaacattgcgattctggtccct
ggtggttcccctgatccagaatga
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