KEGG   Daucus carota (carrot): 108225662
Entry
108225662         CDS       T05350                                 
Name
(RefSeq) MMS19 nucleotide excision repair protein homolog isoform X1
  KO
K15075  DNA repair/transcription protein MET18/MMS19
Organism
dcr  Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:dcr03036]
    108225662
   03400 DNA repair and recombination proteins [BR:dcr03400]
    108225662
Chromosome and associated proteins [BR:dcr03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    108225662
DNA repair and recombination proteins [BR:dcr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     108225662
SSDB
Motif
Pfam: MMS19_N MMS19_C HEAT_EZ
Other DBs
NCBI-GeneID: 108225662
NCBI-ProteinID: XP_063935561
LinkDB
Position
6:4847881..4860359
AA seq 1128 aa
MADSTHCVKLIESFVDSSSTPAQQAASIDAIAALVKNDMLTLESLVREMAMYLTTTDSFL
RARGTLLLGELLACLASKPLESETVLSLIGFFTERLADWKALHGALIGCLALLRRKGNVG
VVSSSKALAVAQSYLQNVQVQSLRQSDRKLCFELLGCLLERYPDDIVHLDDVLIPGICES
IDGEKDPECLMLAFHIVEVLVHLYPDPTGPLASFATDLFENLSCYFPIHFTHPKGEDIDV
KKEELSRTLMVAFASTPLFEPFAIPLLLEKLSSSLPLAKVESLKYLSYCSDKYGAARMAK
HVKVIWSALKDIIYTSPESVLLLESEIVDGMSFQESHTVTEALILLQKVFCQNSDLLIDL
IVIDEDIKKTVDSIYQFKEYTGIPLADKQRLHAVGSILYFSAKSSIGSCNRVFEAFFPCL
INALGISAENSVALLSSPCNFGATYLCVELLAGCRALVVRTKGNATSNVIVQEAWCDILC
TYSTSLTKLFSFTLITGVDGSTQNACLHSGVKGLQILATFPGDFSPISKSVYESILLKLI
SVVTGNCKDAFLWKLALKALVEVGSFVDKSEDTEKAQSFNAIVVDKIASFMLCDDLSMPL
PLKLEIISSIGTTGLSYMQKFLQGLECSLLASLSGVYVRGDPENLEIATSLLECYSCDVL
PWFDSIGGQEEVQFHFALTIWGQIGNILSFCASSQEQKLLSAAMTAMQYAVGRCLAENQT
VIIDRAFGILLSTTSLPINDLMDEITSVKVEGYKSNDDLGCMSCREKWIISLFASVVAAL
RPQAHIANVKVILRLFLTTQLSGHVPSAQALGSIINKLPVKVENMDASNVFSLEDAIDLI
FSSRVWSLCNEGPTNCSVARNNNETSIRNNLLIQSHAIEGLAWIGKGLLMRGHEKVKDLI
VTLLSCLLSNHSEGSLPCTEQEFLCVMRSAADAFHILVSDSEACLNKRLHATIRPLYKQR
LFSIVLPIILSLISKADSSIQRAMLYRAFANVVSGTPLSAVLSEAKKLIPILVDSLFVLS
EDILNKDIVYCILLVLSGIMTDKKRSEVVEENAHIIVRRLIALMSYPHMMVIRETAIQCL
TAMSELPHARIYPMRTQVLLSLLKTLDDPKRAVRLEAVKCRQAWASIA
NT seq 3387 nt   +upstreamnt  +downstreamnt
atggcggattcgactcactgtgttaagctcatcgaatcgttcgttgactcttccagcact
ccagctcagcaggctgcaagtatagatgcaattgcagctctagtgaagaatgatatgtta
acattggaatcattggttagagagatggcaatgtatttgacaaccacagacagctttctt
cgtgccagaggtactctccttcttggagaattgctagcttgtctagcatctaagccattg
gaaagtgaaacggtgcttagtttgataggattcttcactgaaaggctggcagattggaaa
gctttgcacggtgcccttattggttgcttggccttattgaggaggaaaggaaatgttggt
gtagtcagcagcagtaaagcactagcagttgctcagtcttatctgcaaaatgtacaagtt
cagtcattaagacaatcagacaggaagctttgttttgaacttctaggatgccttttggag
cgctatcctgatgatatagtacatctggatgatgtacttatacctggaatttgtgaatct
attgatggagaaaaggatcctgaatgtctaatgcttgcattccatattgtggaagttctg
gtgcatttatatccagatccaactggcccacttgcaagttttgccacagacctttttgag
aatttgagctgttactttcccattcattttacacatccaaagggggaagatattgatgtg
aagaaagaagagctttcaaggacattgatggtggcatttgcttccactcctctgtttgag
ccatttgccattccgctgcttcttgaaaagctttcttcttctttgccactagcaaaggta
gaatccttgaagtatcttagttattgtagtgataagtacggggcagctagaatggcaaaa
catgttaaagttatttggtctgcattgaaagatattatctatacctcaccagaatccgtc
ttactcttggaatcagaaatagtcgatggcatgagctttcaagaaagtcatacggtgacg
gaagcccttatacttctacaaaaggttttttgccaaaacagcgatcttctcatagattta
attgttattgatgaagatataaaaaaaactgtagacagcatttatcagttcaaggaatat
actggtattcctttggcagacaagcaaagattacatgcagttggttctatattgtatttc
tctgccaaatcttccattggttcctgcaacagagtttttgaagctttctttccatgctta
atcaatgcccttgggatttcagctgaaaactcagtcgctctcctttcttcaccatgcaat
tttggagcaacttatctctgcgttgaactccttgctggctgtcgagctttggttgttaga
acaaaaggaaatgctacaagtaatgtcatagtacaggaggcatggtgcgatatattatgt
acttacagtacttcattaaccaaactatttagcttcaccctcatcacaggggtggatggg
agtactcagaatgcttgtttacactctggagtcaaaggcctccaaatattggctacattt
cctggagacttctctccgatatctaaatcagtatatgagagtattttgttaaagttgata
tctgtagttactgggaattgtaaggatgctttcttgtggaaactggcattgaaggcacta
gtggaagttggttcctttgttgataaatctgaagacactgagaaggcgcaaagctttaat
gccattgttgtagataaaattgcttcattcatgctttgtgatgatctttctatgccttta
ccactgaagcttgaaattatttctagcatcggcacaactgggctgagttacatgcaaaag
tttcttcagggcttggagtgttctttattggctagtttatccggagtttatgttagaggt
gatccggagaatcttgaaatagcaacatctcttttggaatgttattcctgcgatgtgtta
ccatggtttgacagtattggaggtcaagaggaagtccagtttcacttcgcgcttactata
tggggccaaattggaaatattttgtctttctgcgctagttctcaggaacagaagctactt
tctgcagcaatgacagccatgcagtacgctgttggacgatgtttggcggaaaatcagaca
gtaatcatcgatagagcttttggcatacttttgtctactacctctttacctataaacgat
ctgatggatgaaattacttcggttaaagtagaaggttataaatccaatgatgacctgggc
tgtatgtcttgtagagagaaatggataatttctctatttgcttcagtagttgcagcgctt
cgccctcaagcacacattgcaaatgtgaaagtgatattgcggttgttcctgactacacag
ctatctggtcatgtaccctcagctcaggcattgggctctataattaataaactacctgta
aaagttgagaacatggatgcttcaaatgtttttagtcttgaagatgcaattgatttgata
tttagcagtagagtatggagtttgtgtaatgaaggtccaactaattgctcagtggctaga
aataataatgagacaagtattagaaacaatctcttgattcaaagtcatgctattgaagga
ttagcctggatagggaaaggattgctcatgcgaggtcatgaaaaggtgaaagatcttata
gtgacattgttgagttgtttactatctaatcacagtgaggggagcctgccatgtacggaa
caggaatttctctgtgttatgaggtctgcagcagatgcatttcatatacttgttagtgat
tctgaagcttgtttaaataaaaggctacatgcaacgataaggccactctataagcaacgt
cttttcagtattgtactgcccattatactatctttaatatcaaaagctgattcatcaatc
caaagagccatgctgtaccgagcatttgctaatgtcgtatctggtactccactcagtgct
gttttgagtgaagcaaagaagctcatccccattcttgtcgacagcttgtttgtgttgagt
gaggacattttgaataaggatatagtttactgtatcttactggtcttatctggaatcatg
acggataaaaaacgatcagaagttgtagaagagaatgcacatatcattgtcagacgcctt
attgcactcatgtcttacccccatatgatggtgatacgagagacagcgattcaatgtctt
actgccatgtctgagttgcctcatgcaagaatatatccgatgcggactcaggttctgttg
tctctattaaaaactcttgatgatccaaagagggctgttcgtctagaagcagtgaaatgt
cgccaggcttgggcatctattgcttga

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