Daucus carota (carrot): 108225718
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Entry
108225718 CDS
T05350
Name
(RefSeq) cleavage stimulation factor subunit 77 isoform X1
KO
K14408
cleavage stimulation factor subunit 3
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108225718
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108225718
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
108225718
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
TPR_19
HAT_Syf1_CNRKL1_C
TPR_15
TPR_CcmH_CycH
TPR_2
TPR_Slam
TPR_16
Iml2-TPR_39
Motif
Other DBs
NCBI-GeneID:
108225718
NCBI-ProteinID:
XP_017256139
UniProt:
A0AAF1B669
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Position
6:complement(21104473..21119485)
Genome browser
AA seq
748 aa
AA seq
DB search
MSDKYSVEAAEKLANEALHLPVSAAVPIYEQLLLAYPTAAKFWKQYVEAHMGENNDDAVK
QLFSRCLLDCLQISLWRCYIRFIRKANDKKGLEGQEETRKAYDFMLNCVGEDIAAGPVWI
EYITFLKSLPAHTAQEESQRMIAVRKVYQKAIVTPTHHVEQLWRDYENFENTVSRQLAKG
LLSEYQPKYNSARAVYRERKKYVDEIDWNMLAVPPSGANKEELQWVAWKKLIAFEKENPQ
RVDSTFANKRIVFTYDQCLMYLYHYPDIWYDYATWHAKSGSVESAIKVFHRALKALPDSE
LLRYAYAELEESRGSIQPAKKTYESLLKDAANTTALSHIQFIRFLRRTEGVEAARRYFLA
VRNSPSCTYQVYVAYAMVAFCLDKDAKVAHNVFESGMKHYMQEPGYILEYADFLFRLNDD
RNIRALFERALSSLPPEKSVEVWKRFSQFEQTYGDLASMLKVEQRRKEALSGTGEESASA
LESSLQEVVSRYSFMDLWPCSSNDLDNLVRQEWLSKNMKKKIEKFSISNGAIQTDKASLG
LATGSNQSTKVIYPDTSRMMVYDPRQKPGPSAPEAPNSATLSGINVPSIVGGTSNSHNDI
LRAAPPALASFIASLPAVEGPSPDVDFVLSICLQSNFPAKQAGKPGTTSKQLQGVAAPSS
SDISGSNKSHLLPNSSSYKPTRDRQTGKRKDFDRQDDNDTVSVQSQPLPKDVFKLRQMRK
ARATGSQTGSVSYGSASAFSGDLSASSG
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atgtctgataaatatagtgtcgaggctgccgaaaagcttgccaatgaggcattgcattta
ccagtttctgcagcagtgccaatatatgagcaacttttacttgcttatccaactgcggct
aaattctggaaacagtatgtggaagcacacatgggtgagaataacgatgatgcagtaaaa
caacttttcagccgatgcctgttggactgtctccaaatctctctttggcggtgttatatt
cggtttatcaggaaagcaaatgataagaaggggctagagggtcaggaagagactaggaaa
gcttatgatttcatgctcaactgtgttggtgaagacattgcagccggacctgtatggatt
gaatacattacctttttgaagtccttgcctgctcatactgcacaagaagagtcacagcga
atgattgctgtgcgaaaagtgtatcagaaagccatcgtcactcctactcaccatgttgaa
cagctctggagagactatgaaaattttgaaaataccgtcagccgtcaactggcaaaagga
ttgttatcagaatatcaaccaaaatacaacagtgcaagagcagtctacagggagcgaaag
aaatatgtcgatgaaatagattggaatatgcttgctgttccaccatctggcgctaacaag
gaagaactgcaatgggtcgcatggaagaagcttatagcatttgaaaaagaaaatcctcag
agggtagacagcacttttgctaacaaacgaattgtattcacgtatgatcagtgcctaatg
tatttatatcattatcctgatatatggtatgactatgctacatggcatgcaaaaagtggc
tcggtagaatctgccattaaagtatttcatcgagctttgaaggctcttccagactctgaa
ttgctgagatatgcatatgcagagctagaagaatctcgtggatcgatccagcctgcaaag
aaaacatacgaaagtcttttgaaggatgcagcgaacacaacagcactatcacacatacag
tttattcgttttctaagaagaactgaaggagtcgaagctgctcgtagatacttcttagct
gtgcgaaattctcccagttgcacttaccaagtttatgttgcgtatgccatggtggcattt
tgtcttgacaaggatgccaaggttgcacacaatgtttttgaatcaggaatgaaacactat
atgcaggagcctggatatattctcgaatatgcagattttttgtttcgcttaaatgatgat
agaaatatcagggctttatttgaacgagcattgagctctctcccacccgagaaatctgtt
gaggtctggaaaagattctctcaatttgagcagacatatggagatcttgctagcatgctg
aaggttgagcaaagacggaaagaagctctttctggaacaggggaggaaagtgcatcagct
ttagaaagttcactgcaagaggttgtatcacgctatagtttcatggatctttggccttgc
tcttctaatgatttagacaacctggtcagacaagaatggctttcgaaaaatatgaagaag
aaaattgagaaattctctatttccaatggagctattcagacagataaagcctctttagga
ctggcaactggttcaaatcaatctacaaaggttatttatccagatacctcaagaatgatg
gtttacgatccaagacagaagcctggaccttctgctcctgaagctcctaattcagccacc
ttatcaggcataaatgtgccatctattgttggtggaacatctaacagtcataacgacatt
ttaagagctgctccgcctgctctggcgtccttcattgctagtttaccagctgtggagggt
ccatctcctgatgttgattttgtgttgtcaatatgtttgcaaagcaactttccagcaaag
caagctggaaaacctggaactacctcaaaacaattgcagggtgtcgctgccccaagttcg
agtgatatctctggatcgaacaaatcacatctacttcccaacagttcgtcatacaaacca
accagggacaggcaaactggcaaaagaaaagattttgacaggcaagatgacaatgatact
gtttctgtacaaagccaaccacttcctaaagatgtttttaagttgcgccagatgagaaaa
gcccgtgctactggttcacaaaccggatccgtttcatatggaagcgcaagtgcgttttca
ggggacctgtctgccagctctggctga
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