Daucus carota (carrot): 108226234
Help
Entry
108226234 CDS
T05350
Name
(RefSeq) probable polygalacturonase At1g80170
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr00040
Pentose and glucuronate interconversions
dcr01100
Metabolic pathways
Module
dcr_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108226234
Enzymes [BR:
dcr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
108226234
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
108226234
NCBI-ProteinID:
XP_017256671
LinkDB
All DBs
Position
6:complement(31259349..31262704)
Genome browser
AA seq
443 aa
AA seq
DB search
MCVIDVIEDNMLQTKVCKYTFYNLSCSIVKIMELVAWFLITGLISFHITYSDAQPADVNV
IENGANGDGKTDSTRAFNKAWDVACGITGASAKLVVPQGRFLVKQTTFKGPCKAAKIIVE
LGGTIVAPDTPKAWDGLDAGVWLVFEAVNGMTLDGLGNKGGFNGNGKGWWDQSCRYHPDL
KGCTKLAPTSLKFFKSNNLRIKGVNIVQSPQTHVLLFKTDRVTIDSVNIDSPKDSPNTDG
IHIQSANGVSISNCKIKNGDDNISIGDHCLNIKINNIECGPGGHGISIGSLGKDGGQVEV
RNIHVKNVSFTDTTNGARIKTWQVGKGVVQNVIYEDIKLEACEAPIVIDQNYCAVRGACK
EKAGSGVQISDVVFKNFHGTAALAETIQMGCSKSFPCKGITLDAIDLSPAKGVPCKAICT
DAHGTEKGTVKPGPCLLAQANEL
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgtcatcgatgtaatagaggataatatgttgcagacaaaggtgtgtaaatacaca
ttctacaatctaagctgttccattgtcaagatcatggaactcgtagcatggtttctgata
accgggcttatttcgtttcacatcacatattcagatgctcaaccagctgatgtcaacgta
atcgaaaatggagctaatggtgatggcaaaacagacagtaccagagctttcaacaaggct
tgggatgtggcatgtggtatcacaggcgccagtgctaaattagtagttcctcaagggcgg
ttcttggtgaaacaaaccacatttaaagggccatgcaaggccgccaagatcattgtagag
cttggtggtacaattgtggcaccagatacacctaaggcgtgggacggattggatgctgga
gtttggctagtatttgaagcagtgaatggaatgacattggatggattaggcaacaaaggt
ggcttcaatggcaatggcaaaggctggtgggatcagtcatgtagataccatcccgatttg
aaaggctgcaccaagctagcacccacaagtttaaagttctttaagagcaacaacctaaga
atcaaaggagtgaatattgtacagagtccgcaaactcatgtactgttgtttaaaaccgac
agagtcactattgactccgttaatatcgattctcctaaagatagtcctaacactgatggc
atccacatccaatcggccaacggagtgagcattagtaactgcaagatcaaaaatggtgat
gacaatatctctattggtgatcactgcctcaacattaaaataaacaatattgaatgtgga
cctggaggtcatggcataagcattggaagcttaggcaaggatggaggtcaagtagaagtg
aggaatattcatgttaaaaatgtttctttcaccgacactacaaatggagctcgaatcaaa
acatggcaggttgggaagggagttgttcaaaatgtcatatatgaagacattaagcttgaa
gcctgtgaagccccaatagtgattgaccaaaattactgtgcggtccgaggtgcttgcaaa
gaaaaagcagggtcgggagttcaaataagtgatgtggtgttcaagaatttccatgggaca
gcggcattagcagaaacaatacaaatgggatgtagcaaatcattcccgtgcaaagggata
acactggatgccatagacttgtcaccggccaagggagtgccttgtaaagccatatgcacc
gacgcccatgggaccgagaaaggaactgttaaaccaggcccctgtcttcttgcccaggct
aatgagctttag
DBGET
integrated database retrieval system
