Daucus carota (carrot): 108226436
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Entry
108226436 CDS
T05350
Name
(RefSeq) protein CLP1 homolog isoform X1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108226436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108226436
Enzymes [BR:
dcr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
108226436
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108226436
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
AAA_22
SRPRB
FtsK_SpoIIIE
DUF1611
ATP_bind_1
AAA_29
ABC_tran
Motif
Other DBs
NCBI-GeneID:
108226436
NCBI-ProteinID:
XP_017256885
LinkDB
All DBs
Position
6:24966986..24971356
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AA seq
505 aa
AA seq
DB search
MKTIELVILKEQYTSIILAKRALTHLLYSSRPFAQSVLVESKRFSPSFRSCLPNPELTFS
ITDAQEQLVDWLLRFNKAVMASASTPEQVKLDKECELRVEIGPESPLRLRLLTGTAEIFG
TEIPPQIWLSFPPSVKFAVFTWYGATIEMDGPTETYYTADETPMVSYVNVHAVLDARRNR
AKASPSDTESSQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITIPG
CVAATPIEMPIDPVEGIPLEMPLVYFYGHPTPSANADLYKVLVKELSKILERQFAGNTES
RAAGMVINTMGWVDGLGYELLLHAIDTFSATVVLVLGQEKLCSMLKDVLKSKPNVDVVKL
QKSGGVVSRNAKVRQKARGHRIREYFYGLTNDLSPHSNVASFSDLTVFRVGGGPQAPRSA
LPIGAEPAADPTRLVQVKIDRDLLHLVLAVSYAKDPNEIISSNVAGFIYVTDVDTQRNKI
TYLAPSAGELPSRYLIVGSLTWIEN
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacaatagaattagttatcctaaaagagcaatatactagtataattttagcaaaa
agagcactgacacatttattgtattcgtcgcgaccattcgcccaatctgtattagtcgag
tccaaacgtttcagcccctccttcaggagctgtttaccaaaccctgagctaactttttcc
atcacagacgcacaggaacagttagttgattggttgttgcggttcaacaaggctgtaatg
gcatcggcatcaacaccagagcaggttaagttggataaggaatgtgagctacgagttgaa
atcggcccggaatctcctcttcgtcttaggctactcactggcactgctgaaatctttggc
actgagatccctcctcaaatttggctctccttccccccttccgtcaaatttgcagttttt
acttggtatggagctactatagaaatggatggtcctactgaaacttattacacagcagat
gagacaccaatggttagttacgtaaatgtacatgctgtactggatgcaaggagaaaccgt
gccaaagcatctcctagtgataccgagtcttctcaaggtccaagggtaattgttgtggga
cctacagattcaggaaagagtaccttgtctaggatgcttcttagttgggcagctaaacaa
ggttggaaacctacatttgtggatttagacattggccaaggatctataaccattcccggg
tgcgtcgctgccactccaattgaaatgcctattgatcctgtggaaggaattcctcttgaa
atgcctcttgtgtacttctatgggcatccaacacctagtgcaaatgctgatctttacaag
gttctggtcaaggaactttctaaaatcttggagagacagtttgccgggaatactgaatct
cgagctgctggaatggtgatcaataccatgggctgggtagatggtcttggttatgagcta
cttttacatgcgattgatacattcagtgcaacagttgttctggttctgggacaggaaaaa
ctttgtagcatgctcaaagatgttttgaaaagcaagcctaatgtagatgttgtgaaactt
caaaagtcaggtggcgttgtatcaaggaacgcgaaagtgcgtcagaaggctaggggccac
agaataagggaatacttttatggccttactaatgatctgtccccacactctaatgttgct
agttttagcgatttaactgtctttcgagttggtggggggccacaggcccctcgttcagct
ctgccaattggtgctgagcctgctgcagatccgacaagattggttcaagtaaaaattgac
agggacctgcttcatctagttcttgccgtttcctatgccaaagatccaaatgaaatcatt
tcaagtaatgttgctgggttcatctacgtgacagatgtcgacactcaaaggaataaaatc
acttacctcgcaccgtcagctggagaacttcctagtagatatttaatagtgggatctttg
acatggattgagaattga
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