Daucus carota (carrot): 108226515
Help
Entry
108226515 CDS
T05350
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
108226515
Enzymes [BR:
dcr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
108226515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
CarbopepD_reg_2
Motif
Other DBs
NCBI-GeneID:
108226515
NCBI-ProteinID:
XP_017256970
UniProt:
A0AAF1B5K4
LinkDB
All DBs
Position
6:38851238..38855143
Genome browser
AA seq
638 aa
AA seq
DB search
MAPLGVRLSVEESHVVIDNGLLQVTLSNPDGIVTGLRYNNIDNLLEVLNAESNRGYWDIV
WSAEGTARGGVFEVIKATTFKVIVETDEQVEVSFSRPWDPSLQGKLAPLNIDKRFILLRG
CPGFYSYAIYEHLGSMDWPAFSLSETRIAFKLRKDLFHYMAVTDNRQRYMPLPDDRAPGR
GQPLAYPEAVLLVNPVEPELKGQVDDKYQYSCENKDLKVHGWISTNPAVGFWQITASDEF
RSGGPVKQNLSSHVGPTCLAMFLSGHYAGEELCPKFEQGEAWKKVFGPVFIYLNSVMDGN
DPLTLWDDAKNQMSVEVERWPYSFPASEDFPSSDQRGNVSGRLLVKDSYIDKDLLPAKGG
YVGLAPPGDAGSWQRECKDYQFWTNADESGYFSIKNIRVGNYNLYAWVPGFVGDYKYDVL
FTITEGCDIDVKDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPNYINPILGNPADRFR
QYGLWERYAELYPDSDLVYTIGESDYKKDWFFAQVTRKKDGKTYQGTTWQIKFKLDNVDQ
TGTYKLRVAIAEATLSELQIRMNDQTTSRPLFTTGLIGRANSIARHGIHGLYWLYNVDVP
GKQVIQGDNTIYLTQSRSASPFQGIMYDYIRLEGPATH
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggcgcctcttggggtcagattgtctgttgaagaaagccacgtggttattgataatggc
ttgctccaagtcacactctccaatcctgatggcattgtcactggtttaagatacaacaac
attgacaatttgcttgaagttcttaacgctgaaagtaatcgcgggtactgggatattgta
tggagtgcagaaggaacagcgaggggtggagtatttgaagtgatcaaagcgacaactttc
aaggttatagtggaaacagatgaacaagttgaggtgtcattttcgagaccatgggatcct
tctctccagggaaaactagctcccttaaacatcgacaaaaggttcatattgcttcgtggt
tgcccaggtttctattcctatgccatctacgaacacttaggttcaatggattggcctgca
ttcagcctcagtgaaaccagaattgcatttaagcttcggaaagacttatttcattacatg
gctgtaacggataataggcaaaggtacatgcccctaccagatgatcgcgcacctgggaga
ggtcaaccactagcttaccctgaagctgtcctacttgttaaccctgtggagcctgaacta
aaaggacaggtggatgataaataccagtactcgtgtgagaacaaagatctaaaagtccat
ggttggataagtactaatccagccgtggggttctggcaaattacagccagtgatgagttc
aggtcaggcgggcctgtcaaacagaacctctcctcgcatgtgggacccacttgcctcgct
atgtttctcagtggtcattatgccggtgaggagttgtgtcctaaatttgagcagggtgag
gcgtggaagaaagtttttggaccagttttcatatatctgaactctgtaatggatggaaat
gatccactcacactctgggatgatgccaaaaatcagatgtcggttgaagtggaaaggtgg
ccttatagttttccagcatcagaggacttcccatcatcagatcaacgtggaaatgttagc
ggtagactattagttaaggacagctacattgacaaggatttactaccagctaagggaggt
tatgtgggattagcgccaccaggagatgctggttcgtggcaaagagaatgcaaggactat
cagttctggacaaatgcagatgagtcgggctacttctccataaaaaacatacgcgttgga
aactataatttgtatgcttgggtaccaggattcgttggagattacaaatatgatgttcta
tttaccattactgaaggctgcgatattgatgtgaaagatcttgtgtacgagcctccaaga
gatgggccaacactatgggaaatcgggatccctgatcgctcagctgccgaattctatgta
ccagatcctaatccgaactacattaatccaattttaggcaatcctgcagataggtttagg
cagtatggattatgggaaaggtacgcagagctatatcctgatagtgatttagtgtataca
attggcgagagcgactacaagaaagattggttttttgctcaggttacaaggaaaaaggat
ggcaaaacttatcaaggaaccacttggcagatcaagtttaagcttgacaatgtagatcaa
accggaacatacaagctaagagtggctatcgcagaagcaaccctatccgaattgcagatt
cggatgaatgaccaaacaacaagtcgccctctattcacgacaggactgattgggagggct
aactccatcgcgagacacgggatccatggactatactggctgtacaatgtggatgtacca
ggaaagcaagtgattcaaggtgataacaccatttatttgacacaatcaagaagtgctagt
cctttccagggcatcatgtatgattacattcgtctcgaagggcctgcaactcactaa
DBGET
integrated database retrieval system
