Daucus carota (carrot): 108227139
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Entry
108227139 CDS
T05350
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcr03021
]
108227139
03036 Chromosome and associated proteins [BR:
dcr03036
]
108227139
Transcription machinery [BR:
dcr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
108227139
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
108227139
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
SPT6_acidic
YqgF
HTH_44
Spt6_S1
Tex_central_region
HHH_9
HHH_3
SH2
Motif
Other DBs
NCBI-GeneID:
108227139
NCBI-ProteinID:
XP_017257628
UniProt:
A0AAF0XG12
LinkDB
All DBs
Position
6:complement(33754345..33763247)
Genome browser
AA seq
1581 aa
AA seq
DB search
MAVVSDDEEVELEEEEEREEEVDQREDRDDEDEDEEDEEGEDEYEKDGFIVDDVDEEEQQ
DGEDEGAESDEERQKKKKRKKRESEKNYELDEDDYELLQDNNITVHRPSGSKKFKRLKKA
RKDVEDDHSGFSDDDDFHSSGKVGRTAEEKLKRSLFGDEGPQLEDIAEEEHPDEEEDELE
DVDEMADFIVDEEEVDEDGIPIKRKKVKQKKSRQAPGVSSSALQEAHDIFGDVDELLKLR
KLGTSKTSSRSYDDSGEWKERGLGGHFEPSVLSEKYMTEQDDEIREADIPERMQIYEKST
GPPPIDESSIDDESLWICHQLSTNMFYLFGRNIWSTEEGGHELSIIKEDIMRFLEFMHVQ
KLDVPYIAMYRKEECLSLFKDIDQHDTESNMNKADKKPVIKWHKLLWAIVDLDRKWLLLQ
KRKNALQTYYNKRYEEESRSIYDETRLNLNKQLFESISKSLKAAESDREVDDVDLKLNLH
FPPGEVSVEEGKYKRPTRKSLYTSCSKAGLWEVANKFGYSSEQFGLQISLEKMRMDELED
AKETPEEMASNFTCAMFETPQNVLKGARHMAAMEISCEPCVRKHVRSIFMENAKVSTSPT
PDGNVAIDTFHQYASIKWLREKPLTRFEDAQWLLIQKAEEEKLIQVTIKLPESVLNKLIG
DAHDYYLSDGVSKSAQLWNEQRKLILQDAFFVYLFPSMEKEARSLLTIRAKSWLLLDYGK
RLWDKVAVAPYQRKESDTNSEEEAAPRVMACCWGPGKPATTFVMLDSSGEVLDVLYAGSL
SNRGQSVDDQQRKKTDQQRVYKFMTDHQPHVVVLGAVNLSCARLKEDIYEIIFRMVEDNP
RDVGHEMDGLSIIYGDETLPHLYENSRISADQLPSQSGIVKRAVALGRYLQNPLAMVATL
CGPGKEILSWKLSPLESFLTPDDKYEMVEQVMVDVTNQVGLDINLAASHEWLFSSLQFVS
GLGPRKAAFLMKSLVRAGSIFTRKDLLTAYGLGKKVFVNAAGFLRVRRSGMAASSSQYID
LLDDTRIHPESYGLAQELAKDVYLADVQDEINDDEDVLEMAIEHVREKPHLLKTLEVHEY
AKSKQYENKLETLNNIRLELIQGFQDWRKQYAEPTQDEEFYMISGETEDTIAEGRIVQAT
IRRVQPQRAVCVLDSGLTGILSKEDYTDNWREVNDLTEKLNEGDIVACRIRSILKNRYQV
FLSSRESEMSSDRYQNHRNLDPYYHEDRSQLVGIQDNIARKQKELAKKHFKPRMIVHPRF
QNITADEAMEFLSDKEPGESIVRPSSRSPSYLTLTIKIYDGVYAHKDIVEGGKDNKDITS
MLRIGKTLKIGEDTFEDLDEVMDRYVDPLIAHLKTMLSYRKFKKGSKAEIDEFLRSEKAD
YPARIVYCFGISHEHPGTFILTYIRSTNPHHEYIGMYPKGFKFRKRMFEDIDRLVAYFQR
HIDDPHDLAPSIRSVAAMVPMQSSAPGGSSGGWSGSNSNDGGWRGQAMDRDRNSSMGART
GRGDYTPGGRHDRHPSGLPRPYGDRGQGMHNNNGRRVGASNERQDADFGKRSDDGLENFP
GARVQNSPGKGAFPGSWGKPW
NT seq
4746 nt
NT seq
+upstream
nt +downstream
nt
atggccgtagtttcagatgacgaagaggtggaattggaggaagaagaagaaagagaagag
gaagttgatcagagagaagatcgcgacgatgaagatgaagacgaggaagacgaagaagga
gaagatgaatacgaaaaggatgggttcattgtagatgatgttgatgaggaggaacaacaa
gatggagaggacgaaggtgctgagagtgatgaagaaaggcagaagaagaagaaaagaaaa
aaaagggaatcagagaaaaattatgaacttgacgaagatgactatgagctcctacaggat
aacaacatcaccgttcatcgcccatcgggaagtaaaaaatttaaacgcttgaaaaaagct
cggaaggatgttgaggatgatcattctggattttctgatgatgatgattttcatagcagc
gggaaggttggacgaacagcagaggagaagctcaagcgtagtttatttggtgatgaggga
ccacaactcgaagacattgcagaagaagaacacccagacgaagaggaagatgaacttgag
gatgtcgatgagatggctgactttatagttgacgaagaggaagtcgatgaagatggaatt
cctataaagaggaagaaggtaaaacagaaaaaatctagacaggctccaggagtttcatca
tcagccctgcaggaagctcatgacatctttggtgacgttgatgagctgttaaagctgcgg
aagctaggaacatcaaagacaagtagcagatcttatgatgacagtggtgaatggaaggaa
cgggggctcggaggtcattttgagccgagtgttctttctgagaagtatatgacggagcag
gatgatgaaattcgggaagcagatattccagaaagaatgcagatatatgaaaaaagcact
gggcctccgcctatagatgagtcaagtattgatgacgaaagtttatggatttgtcatcag
ctttccacaaacatgttttatctgtttgggaggaatatatggagtactgaagaaggtggt
catgaactttcaataattaaagaagacataatgagatttctggagttcatgcacgttcaa
aagttagatgtgccttatatcgctatgtatcgaaaagaagagtgcctaagtctattcaag
gatatagaccagcatgacactgagagtaatatgaacaaggctgacaagaagccagttata
aagtggcacaagttactttgggctatagtagacttggataggaagtggttacttctccaa
aaacgaaagaatgctctacagacatactataacaagcgatatgaagaggagtcccgtagc
atatatgatgagactaggctaaatttgaacaaacagctgtttgaatcgattagcaaatca
ctgaaggcagccgagtcagatcgagaggttgatgatgttgacttaaagctcaatttgcac
tttcctccaggggaagttagcgtagaagaagggaaatataagaggccaacacgaaagtca
ctttatactagttgcagtaaggctgggctatgggaggtagctaataagtttggctatagc
tctgagcaatttggactgcagatctctcttgagaaaatgcgaatggatgaattggaggat
gccaaggaaaccccagaggagatggcttcaaattttacatgtgcgatgtttgaaacacca
caaaatgtacttaaaggtgctaggcacatggcagcaatggagattagctgtgaaccatgt
gttaggaaacatgtgcgtagcatttttatggaaaatgcgaaagtatcaactagtcctaca
ccagatgggaatgtagctattgatacttttcatcaatatgcgagcataaaatggttacgt
gagaagccactaaccagatttgaagatgcacagtggctgcttattcagaaagcagaggag
gagaaacttatccaagtaacaattaagttgccagaatccgtcctaaataaattaataggt
gatgctcacgactattatcttagtgacggagtcagtaaatccgctcagttatggaacgag
cagaggaagttgatactgcaggatgcattttttgtttatcttttcccttcaatggagaag
gaagcaaggtctttgttgaccatcagagcaaaaagttggttacttttagattatggaaaa
cggttgtgggataaagttgcagtggcaccatatcagcggaaagaaagtgatacaaactca
gaggaagaagctgcaccaagagttatggcttgttgttggggcccaggaaagcctgcaacc
acttttgtgatgttggattcatctggagaagtcttggatgtgttgtatgctgggtccctc
agtaaccgcggtcaaagtgttgatgaccaacaacgcaaaaagactgatcagcaaagggtt
tataagttcatgactgaccatcagccacatgttgttgttctaggagctgtaaatttgtcc
tgtgcacggttgaaggaagatatatatgagatcatttttaggatggtagaagataatcct
agagatgttggccatgaaatggatggtttaagcattatctatggtgatgaaacccttccg
catttgtatgagaattctcgcatttcggcggaccagcttccttcacagtcaggtattgta
aagcgtgctgttgctctcggacgttatcttcaaaacccattagcaatggttgctacatta
tgtggaccagggaaggaaatattatcttggaagcttagtcctttggagagctttcttact
cctgatgacaagtatgagatggttgaacaggtcatggtagatgtgactaatcaagtgggg
cttgacattaatttggcggcaagccacgaatggttgttttcttctttgcagtttgtttct
gggcttggacctagaaaagcagcgtttttgatgaagtccttggtaagagctgggtctatc
tttacaaggaaagacttgttgacagcgtatggccttgggaaaaaggtttttgtcaatgca
gctggtttcttacgagttaggcggagtgggatggctgctagcagcagtcaatatattgat
ttgctggatgatacacgaatacatccggaatcatatggtcttgcccaagaactggccaaa
gatgtttacctggcagatgttcaagatgaaataaatgacgatgaagatgtattagagatg
gcaatagagcatgtaagagagaaaccacacctgttaaagacgcttgaggttcatgagtat
gctaaatctaaacagtatgagaataaattagaaaccctcaataatattaggttggagttg
attcaaggtttccaggattggcgaaagcaatatgcagagccaactcaagacgaggagttt
tacatgatatctggggagaccgaggacaccatagcagaaggaagaattgtgcaggcaaca
attcgtagggtgcagccccagagggctgtttgtgttctggactctggattaacaggtatt
cttagtaaggaagactacacagacaattggagggaggtaaatgatttgactgagaagctg
aatgaaggtgacattgtagcttgtagaatcaggtcaattcttaagaaccgataccaggtt
tttctaagttccagagagagtgagatgagtagtgataggtatcagaatcatcgaaattta
gatccatactatcacgaggatcgtagccagttggtgggtattcaagataatattgctcgt
aagcagaaggagctggccaaaaagcattttaagccacggatgatagttcatccccgcttc
cagaatattacagctgatgaagctatggagttcttatcggacaaggaacctggtgaaagt
attgtccgtcctagttctcgcagtccttcgtatttgacactgacaatcaaaatttatgac
ggggtttatgctcacaaggacatcgtcgaaggtggtaaggacaacaaggacataactagc
atgcttcgtattggcaaaactttgaaaatcggtgaagacacgtttgaagatttagacgag
gtgatggatcggtatgttgatccattaatagctcatttaaaaactatgttaagctaccgc
aagtttaagaaaggcagtaaagcagaaattgatgagtttttaagatctgagaaagctgat
tatcccgcaagaatcgtctattgctttggcatatcccatgaacatccaggaacctttata
ttgacatatataaggagtacaaatccgcatcacgagtatattggcatgtacccaaaggga
tttaagttccgtaaaaggatgttcgaggacattgatcgcctcgtagcatacttccaaaga
catattgatgatccacatgacctggctccatcaatccggtcggttgctgcaatggttcca
atgcaaagttctgcacctgggggatcttctggtggttggagtggttccaacagcaatgat
ggtggttggagaggccaggccatggaccgtgatagaaattctagtatgggtgctagaaca
ggcaggggagattacacacccggtggccgtcatgatagacatcctagtgggttaccaagg
ccatatggagatcggggccagggtatgcacaataataatggcagaagagttggtgctagc
aatgagaggcaggatgcagattttggaaaaagaagtgatgatggattggaaaattttcct
ggtgccagggttcaaaattcaccaggaaagggggcttttcctggtagttggggtaagccg
tggtga
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integrated database retrieval system
