Daucus carota (carrot): 108227278
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Entry
108227278 CDS
T05350
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1
KO
K14411
RNA-binding protein Musashi
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108227278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108227278
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
108227278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
108227278
NCBI-ProteinID:
XP_017257828
LinkDB
All DBs
Position
6:complement(29795196..29799103)
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AA seq
476 aa
AA seq
DB search
MQSDLGKLFIGGISWDTDEERLKEYFSSFGEVLEAVIMKDRTTGRARGFGFIVFADPAVA
DRVIKEKHNIDGRLVEAKKAVPKDDHSSAVSRNSGSIQGSPGPVRTRKIFVGGLASTVTE
SDFRSYFEQFGNITDVVVMYDHNTQRPRGFGFITYDSEDSVDNVLLRTFHELNGKMVEVK
RAVPKELTPSPNRSPLGGFNYGLGRMSSVLNGYNQGYSPNALGGLGVRMDGRFSPITAGR
TGFAPFGSGYGMNLNLGMNPNYGGNVNLNNSVSYGRGMGPFYNSNRVNNPTGFDGGNLGN
TASLFNSQTRNLWGNGGLDYGANPTNTGGYVGSGTSSIGARNFGFNGLNWDNSPISPQAQ
GGRNVSSQGGIIGYGVENSYNLGGGAYGRNSATTGARMSSHSSSNGGYDATFGDIYGSHP
VYGDSTWHAANSEKEDSVAFSYGLGDGGSDAQINSSPGYVEGYGVTRRQTNRGITG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgcagtctgatctcggaaaattatttatcggcggaatctcatgggacactgatgaagag
cgtctcaaggagtatttcagtagttttggggaggtccttgaagctgtgattatgaaagat
cgaactactggacgagctcgtggttttggatttattgtgtttgcggaccctgctgttgct
gatagggtgattaaggagaagcacaatattgatggcaggctggttgaagcaaaaaaggct
gttccaaaggacgatcatagcagtgcagttagtagaaacagtggtagtattcagggctct
ccaggtccagttcgcactagaaaaatatttgtcggaggtttagcttccactgtcacagaa
agtgactttagaagttactttgagcagtttgggaacatcacagatgttgtggtgatgtac
gatcacaacactcagagaccaagaggatttggttttatcacttacgattccgaggattcg
gtggacaatgtgctgcttagaacttttcatgagcttaatggtaaaatggtagaggtcaag
cgtgctgtcccaaaagagctaacacctagtcctaaccgaagtccgcttggtggtttcaac
tatggtttgggcaggatgagtagtgtcctaaatggctataatcaaggatactcacctaat
gcattaggagggttgggtgtcaggatggatggtaggtttagtccaatcactgctggaagg
accggatttgctccttttggttcgggctatggaatgaacttgaatttaggcatgaacccg
aattatggtggaaatgtcaatcttaacaattcggttagctatgggagggggatgggccct
ttttacaattcaaacagagtaaataatcctacgggttttgatggtggaaatttaggaaac
actgcttctttatttaattcccaaactcgaaacttgtggggtaatggggggctcgattat
ggagcaaatcctacaaacacaggtgggtatgtgggttctggaaccagtagtattggagct
agaaattttggctttaatggacttaactgggataattctccgatttcacctcaggctcaa
ggtggaagaaatgtatctagtcaaggcggtattataggatacggagttgaaaacagttac
aatttgggtggtggagcatatggaagaaacagtgctactactggtgctcgcatgtcatca
cattcctcgtcaaatggtggttatgatgcaacttttggagatatctacggtagtcaccca
gtatatggagacagcacgtggcacgcagcaaattctgagaaagaggattctgtagctttt
agttatgggcttggtgatggaggtagtgatgctcagatcaatagttctccaggttacgtt
gaaggctacggggttacccggagacagactaacagaggaattactggatag
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